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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
126
monocyte
85
heart
83
stomach
79
kidney
71
brain
68
lung
66
muscle of arm
64
HeLa-S3
62
small intestine
61
A549
61
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
51
neural progenitor cell
48
liver
47
CD8-positive, alpha-beta T cell
46
thymus
44
right lung
42
hematopoietic multipotent progenitor cell
41
endothelial cell
41
islet of Langerhans
40
K562
40
right kidney
39
B cell
39
renal cortex interstitium
38
renal pelvis
38
retina
36
left kidney
35
hepatocyte
33
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
heart left ventricle
31
CD14-positive monocyte
30
adipose tissue
30
macrophage
25
MCF-7
25
adipocyte
25
smooth muscle cell
24
pancreatic ductal cell
24
regulatory T cell
23
body of pancreas
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
epithelial cell of proximal tubule
22
pericyte cell
22
sigmoid colon
22
trophoblast cell
21
T cell
21
foreskin keratinocyte
21
keratinocyte
21
natural killer cell
21
tibial nerve
20
T-helper 1 cell
20
breast cancer cell
20
caudate nucleus
20
mononuclear cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
T-helper 17 cell
19
glomerular endothelial cell
19
ovary
19
psoas muscle
18
HFFc6
18
coronary artery
18
embryonic stem cell
18
foreskin fibroblast
18
heart right ventricle
18
mesenchymal stem cell
18
pancreas
18
pancreatic beta cell
18
substantia nigra
17
astrocyte
17
muscle of trunk
17
omental fat pad
17
pancreatic acinar cell
17
pancreatic alpha cell
17
thyroid gland
17
transverse colon
16
cardiac muscle cell
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
layer of hippocampus
16
right atrium auricular region
16
skeletal muscle tissue
16
testis
15
HepG2
15
cerebellum
15
fibroblast of cardiac tissue
15
osteoblast
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
upper lobe of left lung
14
GM12878
14
H9
14
T-helper 2 cell
14
ascending aorta
14
endocrine pancreas
14
mammary gland epithelial cell
14
neutrophil
14
tibial artery
13
CD4-positive, alpha-beta T cell
13
aorta
13
excitatory neuron
13
frontal cortex
13
neurosphere
13
prostate gland
13
skeletal muscle myoblast
13
skeletal muscle satellite cell
13
temporal lobe
12
Peyer's patch
12
bronchial epithelial cell
12
fibroblast of dermis
12
neuroblastoma cell
12
putamen
11
Ammon's horn
11
lymphoblastoid cell line
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
22Rv1
10
epithelial cell of prostate
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left cardiac atrium
10
lymphocyte
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
esophagus
9
esophagus squamous epithelium
9
kidney tubule cell
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
right renal cortex interstitium
9
thoracic aorta
9
trophoblast
9
vagina
8
B-lymphoblastoid cell line
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus muscularis mucosa
8
fibroblast cell line
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
tongue
7
HEK293
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
amygdala
7
angular gyrus
7
choroid plexus epithelial cell
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
limb
7
mature neutrophil
7
mesendoderm
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
May, 2020
June, 2020
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP