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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
107
monocyte
65
stomach
64
heart
61
HeLa-S3
57
kidney
51
brain
50
lung
50
muscle of arm
47
small intestine
46
adrenal gland
45
H1-hESC
45
placenta
44
A549
44
CD8-positive, alpha-beta T cell
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
neural progenitor cell
36
thymus
35
K562
34
retina
34
right lung
32
hematopoietic multipotent progenitor cell
32
liver
31
B cell
31
endothelial cell
30
fibroblast
30
renal cortex interstitium
30
renal pelvis
30
right kidney
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
spleen
23
CD4-positive, alpha-beta memory T cell
22
adipocyte
22
heart left ventricle
22
macrophage
22
smooth muscle cell
21
MCF-7
21
hepatocyte
21
pericyte cell
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
keratinocyte
18
adipose tissue
18
foreskin keratinocyte
17
T cell
17
foreskin fibroblast
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
pancreas
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
cardiac muscle cell
15
natural killer cell
15
ovary
15
psoas muscle
15
retinal pigment epithelial cell
14
astrocyte
14
gastrocnemius medialis
14
mesenchymal stem cell
14
mononuclear cell
14
pancreatic ductal cell
14
transverse colon
13
endothelial cell of umbilical vein
13
fibroblast of cardiac tissue
13
islet of Langerhans
13
osteoblast
13
regulatory T cell
13
thyroid gland
13
upper lobe of left lung
12
body of pancreas
12
excitatory neuron
12
fibroblast of lung
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
12
pancreatic beta cell
12
testis
11
EndoC_BH1
11
caudate nucleus
11
chorionic villus
11
endothelial cell of hepatic sinusoid
11
mammary gland epithelial cell
11
tibial nerve
10
CD4-positive, alpha-beta T cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
coronary artery
10
embryonic stem cell
10
endocrine pancreas
10
gastric cancer cell
10
heart right ventricle
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
prostate gland
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic delta cell
9
right renal pelvis
9
skeletal muscle satellite cell
9
skin fibroblast
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
T-helper 1 cell
8
breast epithelium
8
fibroblast cell line
8
pituitary stalk
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
aorta
7
choroid plexus epithelial cell
7
colonic mucosa
7
erythroblast
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
kidney tubule cell
7
left cardiac atrium
7
left renal cortex interstitium
7
left renal pelvis
7
lower leg skin
7
mesendoderm
7
omental fat pad
7
right atrium auricular region
7
substantia nigra
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
GM23248
6
HUES8
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
hESC cell
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
thoracic aorta
6
tibial artery
6
tongue
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HCT-116 cell
5
HCT116
5
HuH-7
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
May, 2020
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP