Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
chromatin state
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
cell line
1
stem cell
Biosample term
90
heart
84
stomach
81
kidney
73
brain
68
lung
67
muscle of arm
62
small intestine
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
left lung
48
liver
47
neural progenitor cell
47
thymus
45
right lung
42
hematopoietic multipotent progenitor cell
42
islet of Langerhans
42
right kidney
41
B cell
40
renal cortex interstitium
40
renal pelvis
40
retina
39
endothelial cell
36
hepatocyte
36
left kidney
34
heart left ventricle
32
CD4-positive, alpha-beta memory T cell
32
spleen
31
adipose tissue
31
fibroblast
30
spinal cord
27
macrophage
26
regulatory T cell
25
tibial nerve
24
smooth muscle cell
23
T cell
23
adipocyte
23
body of pancreas
23
epithelial cell of proximal tubule
22
CD8-positive, alpha-beta memory T cell
22
caudate nucleus
22
foreskin keratinocyte
22
natural killer cell
22
pancreatic ductal cell
22
pericyte cell
22
sigmoid colon
21
T-helper 1 cell
21
glomerular endothelial cell
21
pancreas
21
subcutaneous adipose tissue
20
coronary artery
20
mononuclear cell
20
pigmented layer of retina
20
trophoblast cell
19
T-helper 17 cell
19
endothelial cell of umbilical vein
19
heart right ventricle
19
ovary
19
psoas muscle
19
right atrium auricular region
18
mesenchymal stem cell
18
substantia nigra
18
tibial artery
17
CD8-positive, alpha-beta T cell
17
gastrocnemius medialis
17
omental fat pad
17
pancreatic beta cell
17
testis
17
thyroid gland
17
transverse colon
16
CD14-positive monocyte
16
ascending aorta
16
astrocyte
16
cerebellum
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
frontal cortex
16
keratinocyte
16
layer of hippocampus
16
muscle of trunk
16
osteoblast
16
retinal pigment epithelial cell
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
T-helper 2 cell
15
endocrine pancreas
15
fibroblast of lung
15
foreskin fibroblast
15
mammary gland epithelial cell
15
pancreatic alpha cell
15
pancreatic delta cell
15
skeletal muscle myoblast
14
Peyer's patch
14
excitatory neuron
14
pancreatic acinar cell
14
prostate gland
14
putamen
13
aorta
13
cardiac muscle cell
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
bronchial epithelial cell
12
fibroblast of cardiac tissue
12
left renal cortex interstitium
12
monocyte
11
cardiomyocytes
11
esophagus muscularis mucosa
11
esophagus squamous epithelium
11
fibroblast of dermis
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
mammary epithelial cell
11
right renal pelvis
10
angular gyrus
10
breast epithelium
10
chorion membrane
10
colonic mucosa
10
dermis blood vessel endothelial cell
10
erythroblast
10
kidney tubule cell
10
neutrophil
10
pancreatic stellate cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
cingulate gyrus
9
duodenal mucosa
9
esophagus
9
foreskin melanocyte
9
hepatic stellate cell
9
neuronal stem cell
9
parathyroid adenoma
skin fibroblast
9
tongue
9
vagina
8
T-cell acute lymphoblastic leukemia
8
endodermal cell
8
extended pluripotent stem (EPS) cells
8
eye
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
globus pallidus
8
induced pluripotent stem cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
7
CD1c-positive myeloid dendritic cell
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
choroid plexus epithelial cell
7
epithelial cell of prostate
7
fibroblast of villous mesenchyme
7
glutamatergic neuron
7
hypothalamus
7
kidney glomerular epithelial cell
7
mature neutrophil
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
renal cortical epithelial cell
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
alternatively activated macrophage
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
memory B cell
6
midbrain
6
middle frontal gyrus
6
mucosa of rectum
6
neuroblastoma cell line
6
nucleus accumbens
6
occipital lobe
6
plasma cell
6
superior temporal gyrus
6
type I muscle cell
6
urinary bladder
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
Organ
1
embryo
Life stage
1
embryonic
Date released
1
August, 2017
Software used
1
chromhmm
Lab
1
Stephen Parker, UMich
Project
1
AMP
RFA
1
AMP
month_released!
May, 2021
biosample_type!
cell line
biosample_term_name!
skin fibroblast
Showing 1 of 1 results
table-tab-icon
matrix-icon
Download
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP