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Schema
Citing CMDGA
Clear Filters
Annotation type
15
accessible chromatin
7
target gene predictions
5
gene expression
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
Annotation Category
5
Gene expression levels
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
2
scRNA-seq
1
ChIP-seq
1
snRNA-seq
Available data
4
tsv
1
bed bed3+
File set status
6
released
Genome assembly (visualization)
2
hg19
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
15
epithelial cell of proximal tubule
14
hepatocyte
13
glomerular endothelial cell
11
breast cancer cell
11
cardiomyocytes
10
islet of Langerhans
10
progenitor cell of endocrine pancreas
9
extended pluripotent stem (EPS) cells
9
gastric cancer cell
9
induced pluripotent stem cell
9
kidney
8
Rhabdomyosarcoma
8
neuroblastoma cell
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
kidney loop of Henle thin ascending limb epithelial cell
7
pancreatic ductal cell
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
endothelial cell
6
hESC cell
6
kidney interstitial cell
6
liposarcoma
6
neuroblastoma cell line
6
regulatory T cell
6
squamous cell lung carcinoma
5
HepG2
5
T-cell acute lymphoblastic leukemia
5
T-helper 1 cell
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
melanoma cell
5
mesangial cell
5
osteosarcoma
5
subcutaneous adipose tissue
4
T-helper 17 cell
4
bone tissue
4
brain
4
cardiac precursors (cardiac muscle cell)
4
endothelial cell of hepatic sinusoid
4
nephron progenitor
4
osteoblast
4
rhabdomyosarcoma cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Ewing sarcoma
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
acute myeloid leukemia
3
adipocyte
3
adipose tissue
3
adult endothelial progenitor cell
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
diffuse large B-cell lymphoma
3
esophageal squamous cell carcinoma
3
glioblastoma cell
3
glioma cell
3
heart
3
hepatic stellate cell
3
hepatocyte(AFP)
3
keratinocyte
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
liver
3
lymphoblast
3
lymphoblastoid cell line
3
mammary epithelial cell
3
natural killer cell
3
neuronal stem cell
3
pancreatic acinar cell
3
pancreatic ductal adenocarcinoma
3
smooth muscle cell of the coronary artery
2
B cell
2
B-lymphocyte
2
COLO205
2
HS-SY-2 cell
2
Jurkat
2
Kupffer cell
2
MCF-7
2
Mantle cell lymphoma
2
RS4-11 cell
2
Rh-4 cell
2
Th1 cell
2
acute myeloid leukemia cell
2
amygdala
2
astrocyte
2
body of pancreas
2
bronchial epithelial cell
2
cardiac muscle cell
2
caudate nucleus
2
chronic lymphocytic leukemia
2
colon adenocarcinoma
2
embryonic stem cell
2
endometriosis
2
epithelial ovarian cancer cell
2
erythroid progenitor cell
2
esophageal carcinoma
2
fibroblast
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
glioblastoma multiforme cancer stem cell
2
heart left ventricle
2
hematopoietic cell
2
hypothalamus
2
immortal foreskin-derived fibroblast cell line cell
2
immortal neural cell line cell
2
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
medulloblastoma cell line
2
mesenchymal stem cell
2
meso-epithelial cell
2
metastatic melanoma
2
monocyte
2
multiple myeloma cell line
2
neural progenitor cell
2
nucleus accumbens
2
occipital lobe
2
omental fat pad
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic cell line
2
pancreatic delta cell
2
pancreatic stellate cell
2
placenta
2
plasma cell
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
prostate gland
2
putamen
2
renal vesicle
2
retina
2
right atrium auricular region
2
skeletal muscle fiber
Organ
6
epithelium
Life stage
3
adult
1
fetal
Date released
5
February, 2021
August, 2021
May, 2021
1
February, 2024
Software used
5
r
1
deeptools
1
macs
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
month_released!
May, 2021
August, 2021
Showing 6 of 6 results
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Download
FileSet
DSR296FOQ
released
Annotation file set
: Histone modifications annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR946TAA
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of End from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661VCO
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Portal Endothelial Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365BTF
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Central Venous LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR308YEA
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Peripotal LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP