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Citing CMDGA
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Annotation type
87
histone modifications
26
gene expression
25
accessible chromatin
17
eQTL
4
target gene predictions
3
binding sites
3
chromatin state
3
sQTL
2
Fine-mapped variants
2
hQTL
2
variant to gene
1
meQTL
1
variant allelic effects
Annotation Category
3
Genetic variant effects
Annotation type Category
3
RNA-seq
1
Expression arrays
Available data
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
2
islet of Langerhans
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
2
pancreas
Life stage
2
adult
Date released
1
August, 2021
1
March, 2023
1
May, 2021
Software used
1
limix
1
matrix-eQTL
1
qTLtools
1
sqtlseeker
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
May, 2022
annotation_type!
other
Showing 3 of 3 results
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP