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Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
4
target gene predictions
3
binding sites
3
chromatin state
2
accessible chromatin
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
3
endothelial cell of umbilical vein
Organ
77
kidney
74
musculature of body
71
brain
71
lung
59
intestine
51
epithelium
50
heart
50
limb
48
connective tissue
36
large intestine
35
skin of body
33
extraembryonic component
29
vasculature
28
embryo
27
bodily fluid
25
blood
24
blood vessel
24
stomach
20
small intestine
17
liver
17
pancreas
16
placenta
15
mammary gland
14
adrenal gland
14
bone element
13
prostate gland
13
ureter
11
thymus
10
adipose tissue
10
penis
9
eye
8
artery
8
gonad
8
lymph node
8
spinal cord
7
esophagus
6
spleen
5
lymphoid tissue
4
mouth
4
nerve
4
ovary
4
testis
4
thyroid gland
4
uterus
3
skeleton
3
vein
2
breast
2
bronchus
2
lymphatic vessel
2
tongue
2
urinary bladder
2
vagina
1
bone marrow
1
nose
Life stage
2
newborn
Date released
January, 2020
2
September, 2022
1
August, 2017
Software used
3
chromhmm
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
month_released!
May, 2022
January, 2020
Showing 3 of 3 results
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FileSet
DSR660JUZ
released
Annotation file set
: Chromatin states for BSS00298 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR550HDB
released
Annotation file set
: Chromatin states for BSS00296 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR000759
released
Annotation file set
: ChromHMM 13-state model for endothelial cell of umbilical vein
Lab:
Stephen Parker, UMich
Project:
AMP