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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
accessible chromatin
8
gene expression
7
target gene predictions
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
Annotation Category
8
Gene expression levels
Annotation type Category
5
scRNA-seq
2
RNA-seq
1
snRNA-seq
Available data
7
tsv
3
txt
File set status
8
released
Genome assembly (visualization)
1
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
16
epithelial cell of proximal tubule
14
glomerular endothelial cell
13
hepatocyte
8
endothelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
5
glomerular visceral epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
pancreatic ductal cell
4
endothelial cell of hepatic sinusoid
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Connecting Tubule Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
Medullary Thick Ascending Limb Cell
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
S-shaped body
3
Transitional Principal-Intercalated Cell
3
hepatocyte(AFP)
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
pancreatic acinar cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
renal vesicle
1
breast - mammary tissue
1
cholangiocyte
1
endothelial cell of coronary artery
1
epithelial cell of distal tubule
1
esophagus - mucosa
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney tubule cell
1
meso-epithelial cell
1
pancreatic alpha+beta cell
1
pancreatic cycling alpha cell
1
pancreatic endothelial cell
1
pancreatic gamma+epsilon cell
1
pancreatic polypeptide-secreting cell
1
proximal tubule
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal cortical epithelial cell
1
renal principal cell
1
ureteric bud
Organ
8
epithelium
Life stage
6
adult
1
fetal
Date released
4
February, 2021
3
August, 2021
May, 2021
1
February, 2024
Software used
8
r
3
seurat
1
deeptools
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
3
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
8
AMP
RFA
4
AMP
4
AMP2
month_released!
November, 2019
May, 2021
Showing 8 of 8 results
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Download
FileSet
DSR239ZHY
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 3
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR555DIA
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 2
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR901DMS
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for endothelial cell cluster 1
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR946TAA
released
Annotation file set
: Gene expression levels (pseudobulks UMIs) of End from GSE114530 scRNAseq fetal kidney
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661VCO
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Portal Endothelial Cells from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365BTF
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Central Venous LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR308YEA
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of liver Peripotal LSECs from GSE115469 scRNA-seq
Lab:
AMP-T2D consortium
Project:
AMP