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Citing CMDGA
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Annotation type
1671
candidate regulatory elements
1215
target gene predictions
977
histone modifications
943
chromatin state
816
binding sites
670
gene expression
642
accessible chromatin
171
eQTL
135
variant allelic effects
125
differential activity
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
1
other
1
representative DNase hypersensitivity sites
Annotation Category
5
Genetic variant effects
Annotation type Category
2
RNA-seq
1
ChIP-seq
Available data
3
bed bed3+
2
tsv
File set status
5
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
2
islet of Langerhans
2
tissue
1
naive thymus-derived CD4-positive, alpha-beta T cell
Organ
2
pancreas
Life stage
1
adult
Date released
2
March, 2023
1
August, 2020
1
August, 2022
1
May, 2021
Software used
2
combined S2G strategy
2
qTLtools
1
limix
1
macs
Lab
5
AMP-T2D consortium
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
month_released!
November, 2021
lab.title!
Kyle Gaulton, UCSD
Showing 5 of 5 results
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Download
FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR860BOU
released
Annotation file set
: Variant to gene predictions in 1000G
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619JSP
released
Annotation file set
: Variant to gene predictions in UK biobank
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR801ZQH
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP