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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
4
accessible chromatin
4
target gene predictions
3
gene expression
1
chromatin state
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
4
bed bed3+
3
bigWig
1
bed bed9+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
3
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
26
heart
26
kidney
26
retina
22
stomach
20
brain
20
pigmented layer of retina
19
A549
18
monocyte
17
muscle of arm
17
muscle of leg
16
lung
16
small intestine
15
adrenal gland
15
placenta
14
large intestine
14
neural progenitor cell
13
B cell
13
common myeloid progenitor, CD34-positive
13
left lung
13
liver
13
muscle of back
12
right lung
12
thymus
11
adipocyte
11
embryonic stem cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
renal cortex interstitium
9
CD4-positive, alpha-beta memory T cell
9
hepatocyte
9
islet of Langerhans
9
left kidney
9
retinal pigment epithelial cell
9
spinal cord
8
EndoC_BH1
8
K562
8
adipose tissue
8
pancreas
8
regulatory T cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
T cell
7
endothelial cell of umbilical vein
7
left cardiac atrium
7
mature neutrophil
7
natural killer cell
7
tibial nerve
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
caudate nucleus
6
coronary artery
6
endothelial cell
6
heart right ventricle
6
mesenchymal stem cell
6
mononuclear cell
6
osteoblast
6
pancreatic beta cell
6
pancreatic ductal cell
6
sigmoid colon
6
tibial artery
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
CD8-positive, alpha-beta T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
gastrocnemius medialis
5
ovary
5
pancreatic alpha cell
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle myoblast
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
HepG2
4
Peyer's patch
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
fibroblast of lung
4
frontal cortex
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
kidney tubule cell
4
layer of hippocampus
4
macrophage
4
mammary gland epithelial cell
4
muscle of trunk
4
omental fat pad
4
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic stellate cell
4
skeletal muscle satellite cell
4
skin fibroblast
4
smooth muscle cell
4
testis
4
thoracic aorta
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
foreskin fibroblast
3
globus pallidus
3
glomerular endothelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
kidney glomerular epithelial cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
memory B cell
3
midbrain
3
mucosa of rectum
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
ESC derived cell line
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
Life stage
1
child
Date released
2
May, 2020
1
January, 2021
1
June, 2020
1
May, 2022
November, 2021
Software used
2
macs
1
chromhmm
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
month_released!
November, 2021
Showing 5 of 5 results
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Download
FileSet
DSR271DAI
released
Annotation file set
: Chromatin state of CD8-positive, alpha-beta T cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP