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Schema
Citing CMDGA
Clear Filters
Annotation type
9
gene expression
5
accessible chromatin
2
binding sites
2
caQTL
2
variant allelic effects
1
eQTL
1
histone modifications
1
target gene predictions
Annotation Category
2
Genetic variant effects
1
Target gene links
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
19
CD14-positive monocyte
14
common myeloid progenitor, CD34-positive
10
B cell
9
CD4-positive, alpha-beta memory T cell
7
CD8-positive, alpha-beta memory T cell
6
T cell
6
fibroblast
6
mononuclear cell
6
olfactory receptor cell
5
endothelial cell of umbilical vein
5
macrophage
5
natural killer cell
5
trophoblast cell
4
CD8-positive, alpha-beta T cell
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
hepatocyte
4
keratinocyte
4
mammary gland epithelial cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
regulatory T cell
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
cardiac muscle cell
3
endothelial cell
3
enterocyte
3
epithelial cell of esophagus
3
epithelial cell of prostate
3
fibroblast of cardiac tissue
3
myofibroblast cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic acinar cell
3
pancreatic ductal cell
3
skeletal muscle myoblast
2
cardiac fibroblast
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
Schwann cell
2
T-cell
2
activated CD4-positive, alpha-beta T cell
2
astrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
bronchial epithelial cell
2
choroid plexus epithelial cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
epithelial cell of proximal tubule
2
erythroblast
2
fibroblast of breast
2
foreskin fibroblast
2
glomerular endothelial cell
2
goblet cell
2
hepatic stellate cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
megakaryocyte
2
monocyte
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
osteoblast
2
pancreatic polypeptide-secreting cell
2
renal cortical epithelial cell
2
skeletal muscle cell
2
skeletal muscle fiber
2
skin fibroblast
2
smooth muscle cell
2
smooth muscle cell of the brain vasculature
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
CD1c-positive myeloid dendritic cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
astrocyte of the spinal cord
1
brain microvascular endothelial cell
1
brain pericyte
1
bronchial goblet cell
1
cell
1
conventional dendritic cell
1
cortical cell of adrenal gland
1
epidermal melanocyte
1
epithelial cell of amnion
1
fibroblast of arm
1
fibroblast of gingiva
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin melanocyte
1
glomerular visceral epithelial cell
1
granulosa cell
1
inflammatory macrophage
1
iris pigment epithelial cell
1
luminal epithelial cell of mammary gland
1
luminal epithelial cell of prostatic duct
1
lung microvascular endothelial cell
1
lymphocyte of B lineage
1
mammary epithelial cell
1
mammary stem cell
1
mast cell
1
megakaryocyte-erythroid progenitor cell
1
memory B cell
1
mesothelial cell
1
naive t cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
non-pigmented ciliary epithelial cell
1
pancreatic A cell
1
pancreatic endocrine cell
1
pancreatic stellate cell
1
parietal cell
1
peptic cell
1
pericyte cell
1
plasmacytoid dendritic cell
1
pulmonary artery endothelial cell
1
regular cardiac myocyte
1
retinal pigment epithelial cell
1
skeletal muscle satellite cell
1
smooth muscle cell of the coronary artery
1
stellate neuron
1
stromal cell of bone marrow
1
thyroid follicular cell
1
type B pancreatic cell
1
type II pneumocyte
Organ
3
epithelium
Date released
November, 2021
2
February, 2024
1
January, 2021
Software used
2
deltasvm
1
cicero
Lab
2
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
month_released!
November, 2021
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D