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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
5
accessible chromatin
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
16
fibroblast
10
pericyte cell
5
adipocyte
5
osteoblast
4
fibroblast of cardiac tissue
4
pancreatic stellate cell
3
cardiac fibroblast
3
hepatic stellate cell
3
mesenchymal stem cell
3
skin fibroblast
2
brain pericyte
2
extracellular matrix secreting cell
2
mesangial cell
2
omental fat pad
2
subcutaneous adipose tissue
1
GM23248
1
SGBS preadipocytes
1
adipose tissue
1
adipose-derived mesenchymal stem cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
luteal cell
1
preadipocyte
1
pulmonary interstitial fibroblast
1
stromal cell
Organ
5
connective tissue
Date released
2
February, 2024
1
June, 2020
1
November, 2021
November, 2022
1
October, 2019
Software used
5
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
4
AMP
1
ENCODE
RFA
3
AMP
1
AMP2
1
ENCODE3
month_released!
November, 2022
annotation_type!
other
Showing 5 of 5 results
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FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP