Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
2
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
primary cell
1
stem cell
Biosample term
58
HeLa-S3
49
heart
47
stomach
46
kidney
44
H1-hESC
40
brain
35
lung
35
muscle of arm
35
neural progenitor cell
33
adrenal gland
33
liver
33
small intestine
32
muscle of leg
32
placenta
31
islet of Langerhans
30
large intestine
29
K562
28
muscle of back
26
A549
26
left lung
26
retina
26
thymus
23
heart left ventricle
23
right lung
22
hematopoietic multipotent progenitor cell
22
renal cortex interstitium
22
renal pelvis
22
right kidney
21
spinal cord
21
spleen
20
breast cancer cell
19
HFFc6
18
left kidney
17
pancreas
17
tibial nerve
16
MCF-7
16
adipocyte
16
adipose tissue
16
embryonic stem cell
16
subcutaneous adipose tissue
15
EndoC_BH1
15
HepG2
caudate nucleus
15
coronary artery
14
GM12878
14
H9
13
body of pancreas
13
tibial artery
12
heart right ventricle
12
lymphoblastoid cell line
12
neuroblastoma cell
12
putamen
12
right atrium auricular region
12
substantia nigra
11
omental fat pad
11
ovary
11
psoas muscle
11
sigmoid colon
10
Rhabdomyosarcoma
10
gastric cancer cell
10
testis
10
thyroid gland
9
Ammon's horn
9
ascending aorta
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
layer of hippocampus
9
left cardiac atrium
9
liposarcoma
9
muscle of trunk
9
transverse colon
9
upper lobe of left lung
8
B-lymphoblastoid cell line
8
Peyer's patch
8
cardiac muscle cell
8
cerebellum
8
fibroblast cell line
8
gastrocnemius medialis
8
pituitary stalk
8
prostate gland
8
skeletal muscle tissue
7
HEK293
7
IMR-90
7
Jurkat
7
aorta
7
esophageal adenocarcinoma
7
left renal cortex interstitium
7
left renal pelvis
7
lymphocyte
7
mesendoderm
7
neuronal stem cell
7
pigmented layer of retina
7
temporal lobe
6
22Rv1
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM19240
6
HAP-1
6
HL-60
6
HT-29
6
HUES8
6
KARPAS-422 cell
6
LNCAP
6
MM.1S
6
OCI-LY7
6
PC-9
6
Rh-4 cell
6
SK-N-MC
6
SK-N-SH
6
T-cell acute lymphoblastic leukemia
6
breast epithelium
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
mesenchymal stem cell
6
neuroblastoma cell line
6
right renal cortex interstitium
6
right renal pelvis
6
trophoblast
6
uterus
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CMK
5
Caco-2 cell
5
CyT49
5
Ewing sarcoma
5
GM12875
5
GM19238
5
GM19239
5
GM23248
5
HCT-116 cell
5
LHCN-M2
5
LoVo cell
5
MG63
5
NAMALWA cell
5
NT2-D1 cell
5
PC-3
5
RPMI8226
5
RS4-11 cell
5
RWPE1
5
SK-N-DZ
5
SW480
5
U937
5
WERI-Rb-1
5
WI38
5
acute myeloid leukemia
5
amygdala
5
chorionic villus
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
midbrain
5
osteosarcoma
5
prostate cancer cell line
5
right lobe of liver
5
thoracic aorta
4
B cell
4
C1 segment of cervical spinal cord
4
COLO205
4
Daoy
4
GM08714
4
GM10248
4
GM10266
4
GM12873
4
GM12891
4
GM12892
4
GM18505
4
GM18507
4
GM19099
4
GM19193
4
H7-hESC
4
HAC cell
4
HBMEC cell
4
HCT116
4
HS-SY-2 cell
4
HUES6
4
HuH-7
4
KBM-7
4
MDA-MB-231 cell
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
Normal Human Astrocytes
4
OCI-LY1
4
PANC-1 cell
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
RKO
4
SJSA1
4
SK-N-SH_RA
4
T-47D cell
4
U2OS
4
angular gyrus
4
anterior cingulate cortex
4
cartilage tissue
Organ
8
connective tissue
Life stage
2
embryonic
1
adult
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
r
3
macs
2
chromhmm
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
November, 2022
biosample_type!
primary cell
biosample_term_name!
caudate nucleus
software_used.software.name!
r
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337GCY
released
Annotation file set
: Histone modifications annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR959CJP
released
Annotation file set
: Binding sites annotation for Others Mesenchymal_stem_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP