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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
129
monocyte
55
HeLa-S3
51
H1-hESC
47
CD8-positive, alpha-beta T cell
43
islet of Langerhans
39
kidney
39
neural progenitor cell
33
heart
31
retina
29
hepatocyte
29
stomach
27
liver
25
brain
23
K562
23
endothelial cell
21
EndoC_BH1
21
subcutaneous adipose tissue
20
adrenal gland
20
breast cancer cell
20
epithelial cell of proximal tubule
20
lung
20
pancreatic ductal cell
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
adipocyte
19
heart left ventricle
19
macrophage
19
muscle of arm
19
muscle of leg
18
embryonic stem cell
18
glomerular endothelial cell
18
placenta
18
small intestine
17
large intestine
16
B cell
16
regulatory T cell
16
spleen
15
common myeloid progenitor, CD34-positive
15
muscle of back
15
tibial nerve
14
T-helper 1 cell
14
cardiac muscle cell
14
coronary artery
14
endothelial cell of hepatic sinusoid
14
pancreas
14
spinal cord
14
thymus
13
CD4-positive, alpha-beta T cell
13
GM12878
13
H9
13
caudate nucleus
13
endothelial cell of umbilical vein
13
hematopoietic multipotent progenitor cell
13
left lung
13
osteoblast
13
renal cortex interstitium
13
renal pelvis
12
adipose tissue
12
fibroblast
12
foreskin fibroblast
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
retinal pigment epithelial cell
12
right atrium auricular region
12
right lung
12
substantia nigra
11
MCF-7
11
T-helper 17 cell
11
body of pancreas
11
mesenchymal stem cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
natural killer cell
11
omental fat pad
11
pancreatic beta cell
11
putamen
11
tibial artery
10
HepG2
10
Rhabdomyosarcoma
10
frontal cortex
10
gastric cancer cell
10
keratinocyte
10
neuronal stem cell
10
pancreatic acinar cell
10
progenitor cell of endocrine pancreas
10
right kidney
10
skeletal muscle myoblast
9
Ammon's horn
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
heart right ventricle
9
induced pluripotent stem cell
9
liposarcoma
9
ovary
9
smooth muscle cell
9
testis
8
A549
8
B-lymphoblastoid cell line
8
ascending aorta
8
fibroblast cell line
8
foreskin keratinocyte
8
glomerular visceral epithelial cell
8
left cardiac atrium
8
neutrophil
8
pancreatic alpha cell
8
pituitary stalk
7
Jurkat
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
mature neutrophil
7
pancreatic stellate cell
7
temporal lobe
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
anterior cingulate cortex
6
aorta
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of lung
6
hESC cell
6
hepatic stellate cell
6
hypothalamus
6
iPSC derived cell line
6
left kidney
6
lymphocyte
6
neuroblastoma cell line
6
nucleus accumbens
6
sigmoid colon
6
skeletal muscle satellite cell
6
smooth muscle cell of the coronary artery
6
trophoblast cell
6
upper lobe of left lung
5
cardiac fibroblast
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
PC-9
5
Rh-4 cell
5
SGBS preadipocytes
5
SK-N-MC
5
T cell
5
T-helper 2 cell
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mesendoderm
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
osteosarcoma
5
pancreatic delta cell
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
5
transverse colon
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
CD1c-positive myeloid dendritic cell
4
CD4-positive helper T cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
Ishikawa
Life stage
1
embryonic
Date released
3
February, 2021
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
September, 2022
Showing 6 of 6 results
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP