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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
accessible chromatin
1
eQTL
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
5
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
6
tissue
Biosample term
38
islet of Langerhans
29
kidney
28
heart
26
stomach
24
liver
23
brain
20
lung
19
adrenal gland
19
subcutaneous adipose tissue
18
muscle of arm
17
large intestine
17
muscle of leg
17
placenta
17
small intestine
16
heart left ventricle
15
muscle of back
14
spleen
14
thymus
13
left lung
13
tibial nerve
12
adipose tissue
12
body of pancreas
12
coronary artery
12
renal cortex interstitium
12
substantia nigra
11
caudate nucleus
11
pancreas
11
renal pelvis
11
right kidney
11
right lung
10
omental fat pad
10
putamen
10
right atrium auricular region
10
tibial artery
9
ascending aorta
9
cerebellum
9
heart right ventricle
9
left kidney
9
spinal cord
8
frontal cortex
8
left cardiac atrium
8
ovary
8
retina
8
temporal lobe
8
testis
7
Ammon's horn
7
amygdala
7
aorta
7
hypothalamus
7
layer of hippocampus
7
nucleus accumbens
7
prostate gland
7
psoas muscle
7
sigmoid colon
7
skeletal muscle tissue
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
6
right lobe of liver
6
subcutaneous abdominal adipose tissue
6
thyroid gland
6
transverse colon
6
upper lobe of left lung
5
C1 segment of cervical spinal cord
5
cartilage tissue
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
left renal cortex interstitium
5
left renal pelvis
5
left ventricle myocardium
5
muscle of trunk
5
right cardiac atrium
5
right renal pelvis
5
uterus
4
Peyer's patch
4
angular gyrus
4
bone tissue
4
breast epithelium
4
chorionic villus
4
colonic mucosa
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
esophagus
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
gastroesophageal sphincter
4
lower leg skin
4
right renal cortex interstitium
4
thoracic aorta
4
trophoblast
4
vagina
4
visceral abdominal adipose tissue
3
cingulate gyrus
3
cortex of kidney
3
dorsolateral prefrontal cortex
3
duodenal mucosa
3
endocrine pancreas
3
globus pallidus
3
midbrain
3
mucosa of rectum
3
occipital lobe
3
parathyroid adenoma
3
skin of body
3
stomach smooth muscle
3
suprapubic skin
2
muscle of leg
2
blood
2
breast carcinoma
2
chorion
2
endometrium cancer
2
eye
2
fallopian tube
2
first pancreatic bud
2
germinal matrix
2
kidney epithelium
2
mammary gland
2
middle frontal area 46
2
middle frontal gyrus
2
minor salivary gland
2
muscle layer of colon
2
muscle layer of duodenum
2
pituitary gland
2
placental basal plate
2
prefrontal cortex
2
respiratory system smooth muscle
2
skeletal muscle
2
skin of forearm
2
skin of prepuce of penis
2
superior temporal gyrus
2
tissue
2
tongue
2
umbilical cord
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
abdominal aorta artery
1
amnion
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar cortex
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
femur
1
forelimb muscle
1
frontal pole
1
gastric (mucosa of stomach)
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
limb
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulla oblongata
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
mucosa of stomach
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
Organ
6
thyroid gland
Life stage
4
adult
Date released
September, 2022
4
February, 2021
1
January, 2022
1
May, 2021
Software used
4
encode-ccres
1
abc
1
qTLtools
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
September, 2022
annotation_type!
accessible chromatin
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR782PKI
released
Annotation file set
: thyroid eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR623XVO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE thyroid gland
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR000DTP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE thyroid gland
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR432KNI
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE thyroid gland
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR560IWA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE thyroid gland
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR632XJX
released
Annotation file set
: enhancer-gene predicton of thyroid_gland-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP