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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
1
accessible chromatin
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
5
DNase-seq
3
ChIP-seq
2
RNA-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
1
tsv
File set status
7
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
5
breast epithelium
1
breast
1
breast - mammary tissue
Organ
720
epithelium
340
kidney
333
connective tissue
286
brain
233
pancreas
189
vasculature
171
musculature of body
147
heart
144
blood vessel
143
bodily fluid
138
blood
134
embryo
125
intestine
110
liver
106
limb
102
skin of body
101
lung
82
eye
76
large intestine
71
uterus
65
adipose tissue
54
artery
50
stomach
47
bone element
47
extraembryonic component
45
mammary gland
39
prostate gland
38
lymph node
34
penis
31
adrenal gland
27
small intestine
26
gonad
25
placenta
25
ureter
24
esophagus
19
spinal cord
17
vein
16
nerve
16
spleen
16
thymus
15
lymphatic vessel
14
testis
13
pituitary gland
11
ovary
11
thyroid gland
10
bone marrow
10
bronchus
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Life stage
4
adult
Date released
September, 2022
3
February, 2021
1
January, 2022
1
June, 2020
1
March, 2024
1
May, 2021
Software used
3
encode-ccres
1
abc
1
macs
1
qTLtools
1
r
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
month_released!
September, 2022
files.file_type!
txt
Showing 7 of 7 results
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Download
FileSet
DSR865MBK
released
Annotation file set
: Gene expression summary from GTEx V8 - Gene TPMs for Breast - Mammary Tissue.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266AND
released
Annotation file set
: breast eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR751KRC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE breast epithelium
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR027WWM
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE breast epithelium
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR278EXR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE breast epithelium
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR097EPN
released
Annotation file set
: enhancer-gene predicton of breast_epithelium-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR042SCF
released
Annotation file set
: Accessible chromatin annotation for Breast Breast epithelium from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP