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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
DNase-seq
1
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
24
brain
13
caudate nucleus
12
putamen
12
substantia nigra
10
cerebellum
10
frontal cortex
10
pituitary stalk
9
Ammon's horn
8
temporal lobe
7
amygdala
7
choroid plexus epithelial cell
7
hypothalamus
7
layer of hippocampus
7
nucleus accumbens
6
anterior cingulate cortex
6
cerebellum (Hemisphere)
5
cardiac fibroblast
5
SK-N-MC
5
globus pallidus
5
midbrain
4
BE(2)-C
4
SK-N-DZ
4
SK-N-SH
4
U-87 MG
4
angular gyrus
4
brain pericyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
Daoy
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
cingulate gyrus
3
dorsolateral prefrontal cortex
3
medulla oblongata
3
middle frontal gyrus
3
pons
3
prefrontal cortex
2
A172
2
M059J
2
brain microvascular endothelial cell
2
cerebellar cortex
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
H54
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
inferior parietal cortex
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
3
brain
Life stage
1
unknown
Date released
September, 2022
1
February, 2021
1
January, 2020
1
May, 2020
Software used
1
deltasvm
1
encode-ccres
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
September, 2022
November, 2019
Showing 3 of 3 results
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Download
FileSet
DSR967JTX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR019JSU
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain cerebellum astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656EMP
released
Annotation file set
: Accessible chromatin annotation of brain cerebellum astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP