Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
966
histone modifications
883
accessible chromatin
819
candidate regulatory elements
801
binding sites
658
gene expression
517
target gene predictions
165
eQTL
155
differential activity
131
variant allelic effects
102
chromatin state
65
Fine-mapped variants
10
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
DNase-seq
Available data
3
tsv
2
bed bed3+
File set status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
in vitro differentiated cells
Biosample term
2
islet of Langerhans
2
tissue
1
myocyte
Organ
2
pancreas
Date released
2
March, 2023
1
August, 2020
1
August, 2022
1
February, 2021
Software used
2
combined S2G strategy
2
qTLtools
1
altius-index
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
September, 2022
organ_slims!
blood vessel
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR860BOU
released
Annotation file set
: Variant to gene predictions in 1000G
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR619JSP
released
Annotation file set
: Variant to gene predictions in UK biobank
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP