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Citing CMDGA
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Annotation type
candidate regulatory elements
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
6
colon epithelial cell
4
HCT-116 cell
4
HT-29
3
RKO
3
SW480
3
large intestine
3
sigmoid colon
3
transverse colon
2
HCT116
2
colonic mucosa
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
mucosa of rectum
1
rectum smooth muscle tissue
Organ
3
intestine
3
large intestine
Date released
September, 2022
1
February, 2021
1
June, 2020
1
May, 2021
Software used
2
macs
1
abc
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
month_released!
September, 2022
annotation_type!
candidate regulatory elements
Showing 3 of 3 results
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Download
FileSet
DSR856NEV
released
Annotation file set
: Histone modifications annotation for Digestive tract Colon from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR232GSH
released
Annotation file set
: enhancer-gene predicton of large_intestine_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR820BBL
released
Annotation file set
: Accessible chromatin annotation for Digestive tract Colon from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP