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Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
candidate regulatory elements
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
HiC
1
ChIP-seq
1
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
21
subcutaneous adipose tissue
18
large intestine
14
adipose tissue
12
omental fat pad
8
sigmoid colon
7
transverse colon
6
colon epithelial cell
6
subcutaneous abdominal adipose tissue
5
HT-29
4
HCT-116 cell
4
RKO
4
SW480
4
colonic mucosa
4
visceral abdominal adipose tissue
3
HCT116
3
mucosa of rectum
2
adipose tissue derived mesenchymal stem cell
2
muscle layer of colon
1
omental fat pad
1
Caco-2
1
LoVo
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
mesenchymal stem cell of adipose
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
white adipose cell
1
white adipose tissue
Organ
3
intestine
3
large intestine
0
adipose tissue
Life stage
1
adult
Date released
September, 2022
2
February, 2024
1
February, 2021
Software used
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
September, 2022
Showing 3 of 3 results
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Download
FileSet
DSR311TAK
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. wild-type
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162XYA
released
Annotation file set
: Target gene predictions from Hi-C on HCT116. WAPL KD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR730OKU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HCT116
Lab:
AMP-T2D consortium
Project:
AMP