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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
caQTL
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
2
ATAC-seq
2
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
cell line
2
primary cell
Biosample term
116
monocyte
55
HeLa-S3
48
CD8-positive, alpha-beta T cell
43
H1-hESC
32
fibroblast
32
kidney
32
neural progenitor cell
31
endothelial cell
31
islet of Langerhans
30
heart
30
macrophage
30
retina
28
stomach
25
liver
24
brain
23
K562
23
hepatocyte
20
breast cancer cell
20
pigmented layer of retina
20
smooth muscle cell
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
19
muscle of arm
19
muscle of leg
19
pericyte cell
18
B cell
18
adipocyte
18
heart left ventricle
18
placenta
18
small intestine
17
embryonic stem cell
16
endothelial cell of hepatic sinusoid
16
large intestine
16
subcutaneous adipose tissue
15
CD4-positive, alpha-beta T cell
15
EndoC_BH1
15
common myeloid progenitor, CD34-positive
15
keratinocyte
15
muscle of back
15
pancreatic ductal cell
15
spleen
14
cardiac muscle cell
14
pancreas
14
spinal cord
14
thymus
13
GM12878
13
H9
13
coronary artery
13
endothelial cell of umbilical vein
13
left lung
13
renal cortex interstitium
13
renal pelvis
13
retinal pigment epithelial cell
13
tibial nerve
12
astrocyte
12
excitatory neuron
12
foreskin fibroblast
12
hematopoietic multipotent progenitor cell
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
right lung
11
MCF-7
11
T cell
11
caudate nucleus
11
erythroblast
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic acinar cell
11
pancreatic beta cell
11
putamen
11
tibial artery
10
HepG2
10
Rhabdomyosarcoma
10
adipose tissue
10
gastric cancer cell
10
mesenchymal stem cell
10
natural killer cell
10
neuronal stem cell
10
osteoblast
10
regulatory T cell
10
right atrium auricular region
10
right kidney
10
substantia nigra
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
skeletal muscle myoblast
8
A549
8
Ammon's horn
8
B-lymphoblastoid cell line
8
body of pancreas
8
fibroblast cell line
8
foreskin keratinocyte
8
heart right ventricle
8
neutrophil
8
omental fat pad
8
pancreatic alpha cell
8
pancreatic delta cell
8
pituitary stalk
7
CD4-positive helper T cell
7
Jurkat
7
esophageal adenocarcinoma
7
frontal cortex
7
left cardiac atrium
7
mature neutrophil
7
ovary
7
skeletal muscle satellite cell
7
testis
6
Chondroid Chordoma
6
HEK293
6
HUES8
6
IMR-90
6
LNCAP
6
T-helper 1 cell
6
ascending aorta
6
bronchial epithelial cell
6
chondrocyte
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
hESC cell
6
iPSC derived cell line
6
induced pluripotent stem cell
6
left kidney
6
lymphocyte
6
mammary gland epithelial cell
6
neuroblastoma cell line
6
sigmoid colon
6
trophoblast cell
6
upper lobe of left lung
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
CyT49
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM19240
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
PC-9
5
Peyer's patch
5
SGBS preadipocytes
5
acute myeloid leukemia
5
amygdala
5
cerebellum
5
choroid plexus epithelial cell
5
enterocyte
5
glutamatergic neuron
5
hepatic stellate cell
5
mesendoderm
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
right lobe of liver
5
skeletal muscle fiber
5
skin fibroblast
5
smooth muscle cell of the coronary artery
5
temporal lobe
5
transverse colon
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
C1 segment of cervical spinal cord
4
CD1c-positive myeloid dendritic cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
Ishikawa
4
LoVo cell
4
MDA-MB-231 cell
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
OCI-LY7
4
PANC-1 cell
Organ
5
artery
5
blood vessel
5
heart
5
vasculature
Life stage
1
unknown
Date released
3
February, 2021
1
February, 2023
1
May, 2021
Software used
3
macs
r
1
abc
1
rasqual
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
month_released!
September, 2022
software_used.software.name!
r
Showing 5 of 5 results
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Download
FileSet
DSR702NJX
released
Annotation file set
: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR442EVO
released
Annotation file set
: Accessible chromatin of smooth muscle cell of the coronary artery from GSE113348 ATAC-seq cell lines
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR951OND
released
Annotation file set
: Histone modifications annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR898IID
released
Annotation file set
: Binding sites annotation for Cardiovascular HCASMC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886XYE
released
Annotation file set
: enhancer-gene predicton of coronary_artery_smooth_muscle_cell-Miller2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP