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Schema
Citing CMDGA
Clear Filters
Annotation type
2
Fine-mapped variants
2
chromatin state
2
variant to gene
1
eQTL
1
sQTL
Annotation Category
6
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
6
RNA-seq
2
ChIP-seq
Available data
2
bed bed3+
2
tsv
1
bigBed bed9
File set status
8
released
Genome assembly (visualization)
2
hg19
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
8
islet of Langerhans
7
induced pluripotent stem cell
4
adipocyte
4
pancreatic MUC5B+ductal cell
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic alpha+beta cell
4
pancreatic beta cell
4
pancreatic cycling alpha cell
4
pancreatic delta cell
4
pancreatic ductal cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic stellate cell
3
pancreatic quiescent stellate cell
2
ESC derived cell line
2
EndoC_BH1
2
liver
1
CD34-PB
1
GM12878
1
H1-hESC
1
HepG2
1
K562
1
caudate nucleus
1
cingulate gyrus
1
colonic mucosa
1
duodenal mucosa
1
endothelial cell of umbilical vein
1
fibroblast of lung
1
keratinocyte
1
layer of hippocampus
1
mammary epithelial cell
1
mid-frontal lobe
1
mucosa of rectum
1
pancreas
1
rectum smooth muscle tissue
1
skeletal muscle
1
skeletal muscle myoblast
1
stomach smooth muscle
1
subcutaneous abdominal adipose tissue
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
Organ
8
pancreas
Date released
9
February, 2021
8
August, 2021
6
March, 2023
3
January, 2022
3
March, 2020
3
May, 2020
3
May, 2021
2
August, 2017
1
April, 2019
1
February, 2024
1
January, 2018
1
January, 2020
1
June, 2020
1
November, 2019
1
November, 2021
1
September, 2022
Software used
6
qTLtools
2
chromhmm
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR288NOE
released
Annotation file set
: Fine-mapped sQTL
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR795YSV
released
Annotation file set
: Fine-mapped eQTL
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083JNZ
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642HGW
released
Annotation file set
: All significant variant-to-gene associations for phenotypes with a eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR651OZU
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an eQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR679993
released
Annotation file set
: ChromHMM 13-state model for Islets
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR043890
released
Annotation file set
: ChromHMM 18-state model for Islets
Lab:
AMP-T2D consortium
Project:
AMP