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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
31
neural progenitor cell
9
pigmented layer of retina
8
H1-hESC
8
islet of Langerhans
8
kidney
7
retina
6
liver
6
retinal pigment epithelial cell
5
chondrocyte
4
cartilage tissue
4
endothelial cell
4
glutamatergic neuron
3
SGBS preadipocytes
3
adipose tissue
3
hepatocyte
3
subcutaneous adipose tissue
2
blood
2
kidney distal convoluted tubule epithelial cell
2
renal principal cell
1
B-1 B cell
1
B-2 B cell
1
CD8-positive, alpha-beta T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T-helper 17 cell
1
adipocyte
1
alternatively activated macrophage
1
aorta
1
aortic valve
1
cerebrospinal fluid
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
epithelial cell of proximal tubule
1
gabaergic neuron
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart
1
heart right ventricle
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
left cardiac atrium
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
microglial cell/astrocyte
1
mitral valve
1
natural killer cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
oligodendrocyte
1
omental fat pad
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary valve
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
right cardiac atrium
1
skeletal muscle tissue
1
synovial joint
1
tricuspid valve
Organ
1
connective tissue
Life stage
4
adult
Date released
6
September, 2022
5
February, 2021
5
November, 2021
5
November, 2022
4
August, 2017
4
February, 2024
4
May, 2021
1
June, 2020
1
October, 2019
0
August, 2021
Software used
5
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR936UDZ
released
Annotation file set
: Accessible chromatin of glutamatergic neurons from primary visual cortex from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR223FVD
released
Annotation file set
: Accessible chromatin of glutamatergic neurons from dorsolateral prefrontal cortex from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR357LJU
released
Annotation file set
: Accessible chromatin of glutamatergic neurons from anterior cingulate cortex from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR341UVB
released
Annotation file set
: Accessible chromatin of glutamatergic neurons from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP