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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
Available data
2
bed bed9
2
bigBed bed9
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
31
neural progenitor cell
10
kidney
9
islet of Langerhans
9
pigmented layer of retina
8
H1-hESC
8
retina
7
retinal pigment epithelial cell
6
liver
5
SGBS preadipocytes
5
chondrocyte
4
adipose tissue
4
cartilage tissue
4
endothelial cell
4
glutamatergic neuron
4
hepatocyte
4
subcutaneous adipose tissue
3
cardiac fibroblast
3
aorta
3
heart
3
omental fat pad
2
Ammon's horn
2
blood
2
brain
2
cardiac muscle cell
2
caudate nucleus
2
coronary artery
2
endothelial cell of umbilical vein
2
epithelial cell of proximal tubule
2
frontal cortex
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
heart left ventricle
2
heart right ventricle
2
kidney distal convoluted tubule epithelial cell
2
left cardiac atrium
2
pancreas
2
putamen
2
renal principal cell
2
right atrium auricular region
2
right cardiac atrium
2
tibial artery
1
hindlimb muscle
1
B-1 B cell
1
B-2 B cell
1
C1 segment of cervical spinal cord
1
CD8-positive, alpha-beta T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T-helper 17 cell
1
adipocyte
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
aortic valve
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain microvascular endothelial cell
1
brain pericyte
1
cerebellar cortex
1
cerebellum
1
cerebellum (Hemisphere)
1
cerebrospinal fluid
1
choroid plexus epithelial cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
fetal heart
1
forelimb muscle
1
gabaergic neuron
1
globus pallidus
1
hepatic stellate cell
1
hypothalamus
1
inflammatory macrophage
1
kidney capillary endothelial cell
1
kidney connecting tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left renal pelvis
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
microglial cell/astrocyte
1
middle frontal gyrus
1
mitral valve
1
muscle of arm
1
muscle of leg
1
natural killer cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
nucleus accumbens
1
occipital lobe
1
oligodendrocyte
1
pons
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary valve
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal pelvis
1
right lobe of liver
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle tissue
1
smooth muscle cell of the brain vasculature
1
substantia nigra
1
superior temporal gyrus
1
synovial joint
1
tibial nerve
1
tricuspid valve
Organ
2
blood vessel
2
epithelium
2
vasculature
2
vein
Date released
6
September, 2022
5
February, 2021
2
January, 2020
May, 2020
1
August, 2017
1
June, 2020
1
March, 2020
1
May, 2021
1
October, 2022
0
August, 2021
0
November, 2022
Software used
2
chromhmm
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
month_released!
May, 2020
Showing 2 of 2 results
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Download
FileSet
DSR214PMG
released
Annotation file set
: ChromHMM 18-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772SPX
released
Annotation file set
: ChromHMM 15-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP