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Schema
Citing CMDGA
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Annotation type
1
binding sites
1
gene expression
Annotation Category
1
Gene expression levels
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
scRNA-seq
Available data
1
bed bed3+
1
tsv
1
txt
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
31
neural progenitor cell
9
H1-hESC
8
islet of Langerhans
8
kidney
6
liver
5
endothelial cell
4
cartilage tissue
3
hepatocyte
3
subcutaneous adipose tissue
2
CD4-positive helper T cell
2
HepG2
2
MIN6
2
adipose tissue
2
blood
2
epithelial cell of proximal tubule
2
erythroblast
2
fibroblast of lung
2
foreskin fibroblast
2
kidney distal convoluted tubule epithelial cell
2
renal principal cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-1 B cell
1
B-2 B cell
1
BE(2)-C
1
BJ cell
1
CD8-positive, alpha-beta T cell
1
Caco-2 cell
1
DND-41 cell
1
ECC-1
1
GM06990
1
GM08714
1
GM10847
1
GM12801
1
GM12864
1
GM12865
1
GM12872
1
GM12873
1
GM12874
1
GM12875
1
GM12878
1
GM12891
1
GM12892
1
GM15510
1
GM18505
1
GM18526
1
GM18951
1
GM19099
1
GM19193
1
GM19238
1
GM19239
1
GM19240
1
HAC cell
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HEK293-T-REx cell
1
HFF-Myc
1
HGPS cell
1
HL-60
1
HeLa-S3
1
IMR-90
1
K562
1
MCF-7
1
MCF10A-Er-Src cell
1
NB4
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
PANC-1 cell
1
PFSK-1 cell
1
Raji cell
1
SAEC
1
SH-SY5Y cell
1
SK-N-MC
1
SK-N-SH
1
SK-N-SH_RA
1
T-47D cell
1
T-helper 17 cell
1
U-87 MG
1
U2OS
1
WERI-Rb-1
1
WI-38 cell
1
alternatively activated macrophage
1
aorta
1
aortic adventitial fibroblast
1
aortic valve
1
cardiac fibroblast
1
cardiac muscle cell
1
cerebrospinal fluid
1
choroid plexus epithelial cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of umbilical vein
1
esophageal epithelial cell
1
fibroblast
1
fibroblast of dermis
1
fibroblast of mammary gland
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
glioblastoma cell
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart
1
heart right ventricle
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
left cardiac atrium
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
mesenchymal stem cell
1
mitral valve
1
myotube
1
naive t cell
1
natural killer cell
1
omental fat pad
1
osteoblast
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary valve
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal epithelial cell
1
renal intercalated cell
1
retinal pigment epithelial cell
1
right cardiac atrium
1
skeletal muscle myoblast
1
skeletal muscle tissue
1
smooth muscle cell
1
spinal cord
1
synovial joint
1
tricuspid valve
1
type I muscle cell
1
type II muscle cell
Organ
2
epithelium
2
kidney
Life stage
1
adult
Date released
15
February, 2021
3
September, 2022
1
August, 2021
1
February, 2020
1
January, 2020
1
May, 2020
1
October, 2022
Software used
1
chromhmm
1
r
1
seurat
Lab
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
2
AMP
RFA
1
AMP
1
AMP2
Showing 2 of 2 results
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Download
FileSet
DSR081IKY
released
Annotation file set
: Binding sites annotation for epithelial cell of proximal tubule (RPTEC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR066QTW
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for epithelial cell of proximal tubule
Lab:
Katalin Susztak, Upenn
Project:
AMP