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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
1
caQTL
Annotation Category
2
Target gene links
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
5
snATAC-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
14
retina
10
pigmented layer of retina
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
endothelial cell
3
macrophage
2
CD8-positive, alpha-beta T cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
conventional dendritic cell
2
coronary artery
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
stellate neuron
1
EndoC_BH1
1
fibroblast of the aortic adventitia
1
purified protein and synthetic DNA oligo binding assay
1
smooth muscle cell of the coronary artery
Organ
2
bone element
2
bone marrow
Date released
11
November, 2021
7
January, 2022
4
January, 2021
3
February, 2024
2
February, 2021
2
May, 2020
2
May, 2021
1
April, 2020
1
August, 2021
1
February, 2023
1
June, 2020
1
May, 2022
Software used
2
cicero
2
macs
1
rasqual
Lab
4
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
T1D
1
AMP
RFA
4
T1D
1
AMP
Showing 5 of 5 results
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Download
FileSet
DSR868SOF
released
Annotation file set
: Chromatin accessibility QTLs in macrophages passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR104LZJ
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_macrophage
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR345BXM
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR097XAH
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_macrophage
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR213MXZ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D