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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
3
ATAC-seq
1
pCHi-C
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
5
cardiac fibroblast
5
heart
5
tibial artery
4
coronary artery
4
endothelial cell of umbilical vein
4
heart left ventricle
4
islet of Langerhans
4
right atrium auricular region
4
tibial nerve
3
B cell
3
CD8-positive, alpha-beta T cell
3
brain
3
cardiac muscle cell
3
caudate nucleus
3
frontal cortex
3
kidney
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreas
3
putamen
2
hindlimb muscle
2
muscle of leg
2
Ammon's horn
2
CD4-positive, alpha-beta T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SGBS preadipocytes
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
aorta
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
body of pancreas
2
brain pericyte
2
central memory CD8-positive, alpha-beta T cell
2
cerebellum (Hemisphere)
2
choroid plexus epithelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epithelial cell of proximal tubule
2
gamma-delta T cell
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
heart right ventricle
2
hepatic stellate cell
2
hepatocyte
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
left cardiac atrium
2
left renal cortex interstitium
2
left renal pelvis
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
middle frontal gyrus
2
muscle of arm
2
naive regulatory T cell
2
occipital lobe
2
omental fat pad
2
pons
2
regulatory T cell
2
renal cortex interstitium
2
renal cortical epithelial cell
2
renal pelvis
2
retina
2
right kidney
2
right renal cortex interstitium
2
right renal pelvis
2
skeletal muscle cell
2
skeletal muscle myoblast
2
smooth muscle cell of the brain vasculature
2
subcutaneous adipose tissue
2
superior temporal gyrus
1
brain microvascular endothelial cell
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
C1 segment of cervical spinal cord
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
brain microvascular endothelial cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebellar cortex
1
cerebellum
1
erythroblast
1
fetal heart
1
forelimb muscle
1
hypothalamus
1
immature natural killer cell
1
inflammatory macrophage
1
kidney tubule cell
1
lymphocyte of B lineage (iPSC)
1
macrophage
1
megakaryocyte
1
muscle of leg
1
myeloid dendritic cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
nucleus accumbens
1
plasma cell
1
plasmacytoid dendritic cell
1
retinal pigment epithelial cell
1
right cardiac atrium
1
right lobe of liver
1
substantia nigra
1
thoracic aorta
1
thymus
Organ
4
pancreas
Life stage
4
adult
Date released
9
February, 2021
8
August, 2021
6
March, 2023
3
January, 2022
3
March, 2020
3
May, 2020
3
May, 2021
2
August, 2017
1
April, 2019
1
February, 2024
1
January, 2018
1
January, 2020
June, 2020
1
November, 2019
1
November, 2021
1
September, 2022
Software used
1
chicago
1
deltasvm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
June, 2020
Showing 4 of 4 results
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Download
FileSet
DSR941LPG
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 5 T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR610XQN
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 38 non-diabetic samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR159BKA
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic islet ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR299XDW
released
Annotation file set
: Target gene prediction annotation derived from chromatin loops in islet pcHi-C
Lab:
AMP-T2D consortium
Project:
AMP