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Schema
Citing CMDGA
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Annotation type
2
accessible chromatin
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
6
pancreatic beta cell
5
pancreatic alpha cell
4
pancreatic delta cell
3
pancreatic acinar cell
3
pancreatic ductal cell
2
CD8-positive, alpha-beta T cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
conventional dendritic cell
2
endothelial cell
2
heart left ventricle
2
macrophage
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
stellate neuron
1
adipocyte
1
ascending aorta
1
cardiac precursors
1
mesenchymal stem cell
1
pancreas
1
skeletal muscle satellite cell
1
thoracic aorta
Organ
3
epithelium
3
pancreas
Date released
4
March, 2023
4
November, 2021
3
February, 2024
2
January, 2021
2
May, 2021
1
August, 2018
1
February, 2021
1
October, 2019
Software used
2
macs
1
cicero
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
Showing 3 of 3 results
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Download
FileSet
DSR521RYC
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of acinar
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR467IUK
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of acinar
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR639GZY
released
Annotation file set
: Pancreatic acinar cell accessible chromatin annotation of overlapping ATAC-seq sites from 4 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP