Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
4
snATAC-seq
1
ATAC-seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
6
pancreatic beta cell
5
pancreatic alpha cell
4
pancreatic delta cell
3
pancreatic acinar cell
3
pancreatic ductal cell
2
CD8-positive, alpha-beta T cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
conventional dendritic cell
2
endothelial cell
2
heart left ventricle
2
macrophage
2
megakaryocyte
2
memory B cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
stellate neuron
1
adipocyte
1
ascending aorta
1
cardiac precursors
1
mesenchymal stem cell
1
pancreas
1
skeletal muscle satellite cell
1
thoracic aorta
Organ
5
epithelium
5
pancreas
Life stage
1
adult
Date released
4
January, 2021
4
March, 2023
2
February, 2021
2
November, 2021
1
August, 2018
February, 2024
1
May, 2021
1
October, 2019
1
September, 2022
Software used
3
macs
2
cicero
Lab
4
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
4
T1D
1
AMP
RFA
4
T1D
1
AMP
month_released!
February, 2024
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR746SVT
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR998IGH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR018TPI
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR185GHH
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP