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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
32
neural progenitor cell
11
islet of Langerhans
9
pigmented layer of retina
8
H1-hESC
8
kidney
8
liver
7
hepatocyte
7
retina
6
retinal pigment epithelial cell
6
subcutaneous adipose tissue
5
chondrocyte
4
Ammon's horn
4
adipose tissue
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
endothelial cell
4
glutamatergic neuron
4
omental fat pad
3
C1 segment of cervical spinal cord
3
SGBS preadipocytes
3
amygdala
3
anterior cingulate cortex
3
aorta
3
ascending aorta
3
body of pancreas
3
caudate nucleus
3
cerebellum
3
cerebellum (Hemisphere)
3
coronary artery
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
frontal cortex
3
gastrocnemius medialis(Muscle - Skeletal)
3
heart right ventricle
3
hypothalamus
3
left ventricle myocardium
3
nucleus accumbens
3
psoas muscle
3
putamen
3
right atrium auricular region
3
right lobe of liver
3
substantia nigra
3
tibial artery
3
tibial nerve
2
HepG2
2
blood
2
cardiac precursors (cardiac muscle cell)
2
embryonic stem cell
2
heart
2
heart left ventricle
2
kidney distal convoluted tubule epithelial cell
2
pancreas
2
renal principal cell
2
right cardiac atrium
1
B-1 B cell
1
B-2 B cell
1
B-lymphoblastoid cell line
1
CD8-positive, alpha-beta T cell
1
EndoC_BH1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
T-helper 17 cell
1
adipocyte
1
adrenal gland
1
alternatively activated macrophage
1
aortic valve
1
bladder (urinary bladder)
1
cerebrospinal fluid
1
dendritic cell
1
dorsolateral prefrontal cortex
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
esophagus
1
fibroblast cell line
1
gabaergic neuron
1
gastric (mucosa of stomach)
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
inflammatory macrophage
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
left cardiac atrium
1
lung
1
lymphocyte of B lineage (iPSC)
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mesenchymal stem cell
1
mesendoderm
1
microglial cell/astrocyte
1
mitral valve
1
natural killer cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
oligodendrocyte
1
ovary
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary valve
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
sigmoid colon
1
skeletal muscle tissue
1
small intestine
1
spleen
1
synovial joint
1
thymus
1
tricuspid valve
1
trophoblast
1
white adipose cell
Life stage
4
adult
Date released
4
November, 2021
4
November, 2022
0
August, 2021
0
March, 2020
Software used
4
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR936UDZ
released
Annotation file set
: Accessible chromatin of glutamatergic neurons from primary visual cortex from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR223FVD
released
Annotation file set
: Accessible chromatin of glutamatergic neurons from dorsolateral prefrontal cortex from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR357LJU
released
Annotation file set
: Accessible chromatin of glutamatergic neurons from anterior cingulate cortex from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR341UVB
released
Annotation file set
: Accessible chromatin of glutamatergic neurons from four postmortem donors, three males and one female, ages 20–28 from a single brain collection.
Lab:
AMP-T2D consortium
Project:
AMP