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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
target gene predictions
1
gene expression
Annotation Category
3
cis-regulatory elements
2
Target gene links
1
Gene expression levels
Annotation type Category
2
ATAC-seq
2
snATAC-seq
1
pCHi-C
1
scRNA-seq
Available data
5
bed bed3+
3
bigWig
1
tsv
1
txt
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
4
Homo sapiens
Biosample type
6
primary cell
Biosample term
31
neural progenitor cell
11
islet of Langerhans
9
kidney
8
H1-hESC
6
CD8-positive, alpha-beta T cell
6
endothelial cell
6
liver
5
monocyte
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
4
cartilage tissue
4
heart
4
hepatocyte
4
macrophage
4
memory B cell
4
natural killer cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
regulatory T cell
4
subcutaneous adipose tissue
3
B cell
3
T-helper 17 cell
3
activated CD4-positive, alpha-beta T cell
3
adipose tissue
3
megakaryocyte
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
plasmacytoid dendritic cell
3
tibial artery
3
tibial nerve
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive, alpha-beta T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 2 cell
2
activated CD8-positive, alpha-beta T cell
2
alternatively activated macrophage
2
blood
2
central memory CD8-positive, alpha-beta T cell
2
conventional dendritic cell
2
coronary artery
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
epithelial cell of proximal tubule
2
gamma-delta T cell
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
heart left ventricle
2
heart right ventricle
2
inflammatory macrophage
2
kidney distal convoluted tubule epithelial cell
2
left cardiac atrium
2
left renal cortex interstitium
2
mature natural killer cell
2
medulla oblongata
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
renal principal cell
2
right atrium auricular region
2
right kidney
2
right renal cortex interstitium
2
skeletal muscle myoblast
2
stellate neuron
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
B-1 B cell
1
B-2 B cell
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
Liver fetal (hepatocyte)
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
adult endothelial progenitor cell
1
aorta
1
aortic valve
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
cerebellum (Hemisphere)
1
cerebrospinal fluid
1
choroid plexus epithelial cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
erythroblast
1
frontal cortex
1
globus pallidus
1
hepatic stellate cell
1
immature natural killer cell
1
kidney capillary endothelial cell
1
kidney connecting tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
left renal pelvis
1
lymphocyte of B lineage (iPSC)
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
middle frontal gyrus
1
mitral valve
1
muscle of arm
1
myeloid dendritic cell
1
neutrophil
1
occipital lobe
1
omental fat pad
1
pancreas
1
plasma cell
1
pons
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary valve
1
putamen
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal pelvis
1
retina
1
right cardiac atrium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle tissue
1
smooth muscle cell of the brain vasculature
1
superior temporal gyrus
1
synovial joint
1
thoracic aorta
1
thymus
1
tricuspid valve
Life stage
1
adult
Date released
34
May, 2021
7
February, 2021
3
May, 2020
2
January, 2021
2
November, 2021
1
August, 2021
1
June, 2020
1
May, 2022
Software used
1
chicago
1
cicero
1
macs
1
r
1
seurat
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Katalin Susztak, Upenn
Project
4
AMP
2
T1D
RFA
3
AMP
2
T1D
1
AMP2
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP