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Citing CMDGA
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Annotation type
1
variant allelic effects
Annotation Category
1
Genetic variant effects
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
8
macrophage
6
islet of Langerhans
6
lymphoblastoid cell line
6
monocyte
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
regulatory T cell
4
tibial artery
4
tibial nerve
3
B cell
3
CD8-positive, alpha-beta T cell
3
T follicular helper cell
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
blood cell
3
brain
3
coronary artery
3
heart
3
heart left ventricle
3
naive B cell
3
putamen
3
right atrium auricular region
3
skin of body
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive, alpha-beta T cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T cell
2
activated CD4-positive, alpha-beta T cell
2
adipose tissue
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
fibroblast
2
frontal cortex
2
gamma-delta T cell
2
iPSC derived cell line
2
left renal cortex interstitium
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
muscle
2
naive regulatory T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
natural killer cell
2
neutrophil
2
pancreas
2
right kidney
2
right renal cortex interstitium
2
skeletal muscle myoblast
2
subcutaneous adipose tissue
2
substantia nigra
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
abdominal aorta artery
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
amygdala
1
anterior cingulate cortex
1
ascending aorta
1
astrocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain pericyte
1
breast
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cell
1
cerebellar hemisphere
1
cerebellum
1
cerebellum (Hemisphere)
1
choroid plexus epithelial cell
1
colon sigmoid
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
epithelial cell of proximal tubule
1
erythroblast
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
excitatory neuron
1
fat cell
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart right ventricle
1
helper T cell
1
hepatic stellate cell
1
hepatocyte
1
hippocampal neuron
1
hypothalamus
1
immature natural killer cell
1
inflammatory macrophage
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
layer of hippocampus
1
left cardiac atrium
1
left renal pelvis
1
liver
1
lower motor neuron
1
lung
1
lymphocyte of B lineage (iPSC)
1
megakaryocyte
1
microglial cell
1
middle frontal gyrus
1
minor salivary gland
1
muscle of arm
1
myeloid dendritic cell
1
naive B cel
1
nucleus accumbens
1
occipital lobe
1
ovary
1
pituitary gland
1
placenta
1
plasma cell
1
plasmacytoid dendritic cell
1
pons
1
prostate gland
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal pelvis
1
retina
1
right renal pelvis
1
sensory neuron
1
skeletal muscle cell
1
small intestine
1
smooth muscle cell of the brain vasculature
1
spinal cord
1
spleen
1
stomach
1
superior temporal gyrus
1
testis
1
thoracic aorta
1
thymus
1
thyroid gland
1
transverse colon
1
uterus
1
vagina
1
visceral abdominal adipose tissue
Organ
1
connective tissue
Date released
1
May, 2020
0
January, 2022
Software used
1
deltasvm
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
Showing 1 of 1 results
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Download
FileSet
DSR125CCG
released
Annotation file set
: Genetic variants with deltaSVM predictions in adipose SGBS ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP