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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
1
chromatin state
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
1
bed bed9
1
bigBed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
3
B cell
3
CD8-positive, alpha-beta T cell
3
endothelial cell of umbilical vein
3
erythroblast
3
heart
3
islet of Langerhans
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
skeletal muscle myoblast
3
tibial artery
3
tibial nerve
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive helper T cell
2
CD4-positive, alpha-beta T cell
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
coronary artery
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epithelial cell of proximal tubule
2
fibroblast of lung
2
foreskin fibroblast
2
gamma-delta T cell
2
heart left ventricle
2
left renal cortex interstitium
2
mature natural killer cell
2
medulla oblongata
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
midbrain
2
naive regulatory T cell
2
regulatory T cell
2
right atrium auricular region
2
right kidney
2
right renal cortex interstitium
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
Adipose SGBS cell line (adipocyte)
1
BE(2)-C
1
BJ cell
1
Caco-2 cell
1
DND-41 cell
1
ECC-1
1
EndoC_BH1
1
GM06990
1
GM08714
1
GM10847
1
GM12801
1
GM12864
1
GM12865
1
GM12872
1
GM12873
1
GM12874
1
GM12875
1
GM12878
1
GM12891
1
GM12892
1
GM15510
1
GM18505
1
GM18526
1
GM18951
1
GM19099
1
GM19193
1
GM19238
1
GM19239
1
GM19240
1
H1-hESC
1
HAC cell
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HEK293-T-REx cell
1
HFF-Myc
1
HGPS cell
1
HL-60
1
HeLa-S3
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
IMR-90
1
K562
1
Liver fetal (hepatocyte)
1
MCF-7
1
MCF10A-Er-Src cell
1
NB4
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
PANC-1 cell
1
PFSK-1 cell
1
Pancreatic islets
1
Preadipose SGBS cell line (adipocyte)
1
Raji cell
1
SAEC
1
SH-SY5Y cell
1
SK-N-MC
1
SK-N-SH
1
SK-N-SH_RA
1
T-47D cell
1
U-87 MG
1
U2OS
1
WERI-Rb-1
1
WI-38 cell
1
activated CD4-positive, alpha-beta T cell
1
adipose tissue
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
aortic adventitial fibroblast
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
body of pancreas
1
brain
1
brain pericyte
1
cardiac fibroblast
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
caudate nucleus
1
cerebellum (Hemisphere)
1
endothelial cell
1
esophageal epithelial cell
1
fibroblast
1
fibroblast of dermis
1
fibroblast of mammary gland
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
frontal cortex
1
glioblastoma cell
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
heart right ventricle
1
hepatic stellate cell
1
hepatocyte
1
immature natural killer cell
1
inflammatory macrophage
1
kidney
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
left cardiac atrium
1
left renal pelvis
1
lymphocyte of B lineage (iPSC)
1
macrophage
1
mammary epithelial cell
1
megakaryocyte
1
mesenchymal stem cell
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
myotube
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
occipital lobe
1
osteoblast
1
pancreas
1
plasma cell
1
plasmacytoid dendritic cell
1
pons
1
putamen
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal epithelial cell
1
renal pelvis
1
retina
1
retinal pigment epithelial cell
1
right renal pelvis
1
skeletal muscle cell
1
smooth muscle cell
1
smooth muscle cell of the brain vasculature
1
spinal cord
1
subcutaneous adipose tissue
1
superior temporal gyrus
1
thoracic aorta
1
thymus
1
type I muscle cell
1
type II muscle cell
Organ
3
artery
3
blood vessel
3
limb
3
vasculature
Life stage
1
adult
Date released
6
September, 2022
3
March, 2020
3
May, 2020
2
January, 2020
1
February, 2020
1
February, 2021
1
January, 2022
1
June, 2020
1
November, 2019
0
October, 2022
Software used
2
deltasvm
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
Showing 3 of 3 results
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Download
FileSet
DSR238UZR
released
Annotation file set
: Genetic variants with deltaSVM predictions in tibial artery ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR283WPA
released
Annotation file set
: Genetic variants with deltaSVM predictions in artery tibial DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR157HZX
released
Annotation file set
: ChromHMM 18-state model for tibial artery from 26 ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP