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Schema
Citing CMDGA
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Annotation type
8
accessible chromatin
Annotation Category
8
cis-regulatory elements
Annotation type Category
8
ATAC-seq
Available data
7
bed bed3+
4
bigWig
File set status
8
released
Genome assembly (visualization)
7
hg19
Organism
8
Homo sapiens
Biosample type
7
tissue
1
in vitro differentiated cells
Biosample term
9
pigmented layer of retina
7
retina
6
retinal pigment epithelial cell
5
chondrocyte
4
glutamatergic neuron
3
SGBS preadipocytes
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
adipose tissue
1
embryonic stem cell
1
gabaergic neuron
1
microglial cell/astrocyte
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-neuronal cell
1
oligodendrocyte
Disease term
4
age-related macular degeneration
Organ
7
eye
Life stage
7
adult
Date released
14
February, 2023
9
September, 2022
8
November, 2022
5
February, 2021
2
February, 2020
1
January, 2020
1
June, 2020
1
May, 2020
Software used
8
macs
Lab
7
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
7
AMP
1
AMP2
Showing 8 of 8 results
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Download
FileSet
DSR650KSB
released
Annotation file set
: Accessible chromation annotation of differentially accessible regions (DARs) in the retina identified by linear regression modeling of AMD and normal samples (Supplementary Data 5)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR419MDG
released
Annotation file set
: Accessible chromation annotation of differential ATAC-Seq peaks of macular vs. peripheral retinal samples from normal eyes (Supplementary Data 3)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR777QET
released
Annotation file set
: Accessible chromation annotation of ATAC-Seq peaks from all retinal samples (Supplementary Data 1)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR867MCR
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of Retina from Periphery on the Right eye of LateAMD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR041MMC
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of Retina from Periphery on the Left eye of LateAMD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR425JXY
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of Retina from Macula on the Right eye of LateAMD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR270YZO
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of Retina from Macula on the Left eye of LateAMD
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR593BUS
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Hypothalamic Neuron).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP