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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
9
macrophage
6
lymphoblastoid cell line
5
monocyte
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
regulatory T cell
3
activated CD4-positive, alpha-beta T cell
3
activated CD8-positive, alpha-beta T cell
3
blood cell
3
endothelial cell
3
fibroblast
3
islet of Langerhans
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
skin of body
2
CD4-positive helper T cell
2
CD8-positive, alpha-beta T cell
2
MIN6
2
T cell
2
brain
2
conventional dendritic cell
2
erythroblast
2
fibroblast of lung
2
foreskin fibroblast
2
iPSC derived cell line
2
megakaryocyte
2
memory B cell
2
muscle
2
naive B cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
putamen
2
spinal cord
2
stellate neuron
2
substantia nigra
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
BE(2)-C
1
BJ cell
1
Caco-2 cell
1
DND-41 cell
1
ECC-1
1
GM06990
1
GM08714
1
GM10847
1
GM12801
1
GM12864
1
GM12865
1
GM12872
1
GM12873
1
GM12874
1
GM12875
1
GM12878
1
GM12891
1
GM12892
1
GM15510
1
GM18505
1
GM18526
1
GM18951
1
GM19099
1
GM19193
1
GM19238
1
GM19239
1
GM19240
1
H1-hESC
1
HAC cell
1
HBMEC cell
1
HCT-116 cell
1
HEK293
1
HEK293-T-REx cell
1
HFF-Myc
1
HGPS cell
1
HL-60
1
HeLa-S3
1
HepG2
1
IMR-90
1
K562
1
Leydig cell
1
MCF-7
1
MCF10A-Er-Src cell
1
NB4
1
NHEK
1
NT2-D1 cell
1
Normal Human Astrocytes
1
PANC-1 cell
1
PFSK-1 cell
1
Raji cell
1
SAEC
1
SH-SY5Y cell
1
SK-N-MC
1
SK-N-SH
1
SK-N-SH_RA
1
T follicular helper cell
1
T-47D cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
U-87 MG
1
U2OS
1
WERI-Rb-1
1
WI-38 cell
1
abdominal aorta artery
1
adipose tissue
1
adrenal gland
1
amygdala
1
anterior cingulate cortex
1
aortic adventitial fibroblast
1
astrocyte
1
breast
1
cardiac fibroblast
1
cardiac muscle cell
1
caudate nucleus
1
cell
1
cerebellar hemisphere
1
cerebellum
1
choroid plexus epithelial cell
1
colon sigmoid
1
coronary artery
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
esophageal epithelial cell
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
excitatory neuron
1
fat cell
1
fibroblast of dermis
1
fibroblast of mammary gland
1
fibroblast of pulmonary artery
1
fibroblast of villous mesenchyme
1
frontal cortex
1
glioblastoma cell
1
heart left ventricle
1
helper T cell
1
hippocampal neuron
1
hypothalamus
1
layer of hippocampus
1
liver
1
lower motor neuron
1
lung
1
mammary epithelial cell
1
mesenchymal stem cell
1
microglial cell
1
minor salivary gland
1
myotube
1
naive B cel
1
naive t cell
1
neutrophil
1
nucleus accumbens
1
osteoblast
1
ovary
1
pancreas
1
pituitary gland
1
placenta
1
prostate gland
1
renal epithelial cell
1
retinal pigment epithelial cell
1
right atrium auricular region
1
sensory neuron
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell
1
spleen
1
stomach
1
subcutaneous adipose tissue
1
testis
1
thyroid gland
1
tibial artery
1
tibial nerve
1
transverse colon
1
type I muscle cell
1
type II muscle cell
1
uterus
1
vagina
1
visceral abdominal adipose tissue
Organ
4
epithelium
4
pancreas
Date released
4
January, 2021
4
March, 2023
2
February, 2021
2
November, 2021
1
August, 2018
1
February, 2024
1
May, 2021
1
October, 2019
1
September, 2022
0
January, 2022
0
October, 2022
Software used
2
cicero
2
macs
Lab
4
Kyle Gaulton, UCSD
Project
4
T1D
RFA
4
T1D
Showing 4 of 4 results
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Download
FileSet
DSR746SVT
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR998IGH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR018TPI
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR185GHH
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D