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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
54
A549
39
common myeloid progenitor, CD34-positive
30
hematopoietic multipotent progenitor cell
27
CD4-positive, alpha-beta memory T cell
24
B cell
21
CD8-positive, alpha-beta memory T cell
18
K562
18
adipose tissue
18
adrenal gland
18
mononuclear cell
18
stomach
15
MCF-7
15
liver
15
sigmoid colon
15
spleen
12
CD14-positive monocyte
12
T cell
12
body of pancreas
12
endocrine pancreas
12
foreskin keratinocyte
12
gastrocnemius medialis
12
psoas muscle
12
thyroid gland
12
transverse colon
9
HeLa-S3
9
Peyer's patch
9
T-helper 1 cell
9
T-helper 17 cell
9
T-helper 2 cell
9
caudate nucleus
9
endometrium adenocarcinoma
9
fibroblast of dermis
9
fibroblast of lung
9
heart left ventricle
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
mammary gland epithelial cell
9
naive T cell
9
natural killer cell
9
ovary
9
regulatory T cell
9
skeletal muscle tissue
9
small intestine
9
tibial nerve
9
upper lobe of left lung
7
HepG2
6
22Rv1
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-SH
6
T47D
6
adipocyte
6
angular gyrus
6
aorta
6
ascending aorta
6
breast epithelium
6
bronchial epithelial cell
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
duodenal mucosa
6
endothelial cell of umbilical vein
6
epithelial cell of prostate
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
foreskin fibroblast
6
frontal cortex
6
heart
6
heart right ventricle
6
keratinocyte
6
kidney
6
kidney tubule cell
6
lower leg skin
6
lung
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
neutrophil
6
omental fat pad
6
pancreas
6
parathyroid adenoma
6
prostate gland
6
right atrium auricular region
6
skeletal muscle myoblast
6
stomach smooth muscle
6
substantia nigra
6
temporal lobe
6
testis
6
thoracic aorta
6
tibial artery
6
vagina
3
8988T
3
A172
3
A673
3
ACC112
3
ACHN
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO829
3
CWRU1
3
Caco-2 cell
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELR
3
G401
3
GM03348
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HK-2 cell
3
HL-60
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HuH-7
3
HuH-7.5
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
L1-S8R
3
LHCN-M2
3
LoVo cell
3
Loucy
3
M059J
3
MG63
3
MM.1S
3
NB4
3
NCI-H226 cell
3
NCI-H460 cell
3
NCI-H929
3
NT2-D1 cell
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
PC-9
3
Panc1
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJCRH30
3
SJSA1
3
SK-MEL-5
3
SK-N-MC
3
SU-DHL-6
3
SW480
3
VCaP cell
3
WERI-Rb-1
3
WI38
3
aortic endothelial cell
3
astrocyte
Life stage
embryonic
3
child
Date released
31
August, 2021
8
February, 2021
3
September, 2022
1
March, 2020
1
October, 2022
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
relevant_life_stage!
embryonic
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR262GCR
released
Annotation file set
: Candidate regulatory elements for BSS00403 GM08714 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR979UOV
released
Annotation file set
: Target gene predictions for BSS00403 GM08714 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR333NEA
released
Annotation file set
: Chromatin states for BSS00403 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP