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Citing CMDGA
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Annotation type
1643
candidate regulatory elements
1304
target gene predictions
977
histone modifications
930
chromatin state
817
binding sites
682
gene expression
600
accessible chromatin
170
eQTL
167
differential activity
83
variant allelic effects
74
Fine-mapped variants
5
hQTL
5
sQTL
4
caQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
Annotation type Category
snATAC-seq
4
ATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
3
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Biosample term
2
CD4-positive helper T cell
1
coronary artery
1
liver
Organ
1
artery
1
blood vessel
1
heart
1
liver
1
vasculature
Date released
2
October, 2022
1
February, 2023
1
May, 2022
Software used
2
matrix-eQTL
2
rasqual
1
eigenmt
Lab
2
Stephen S. Rich Lab @UVA
1
AMP-T2D consortium
1
Karen Mohlke, UNC
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
organ_slims!
adrenal gland
annotation_type_category!
snATAC-seq
Showing 4 of 4 results
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Download
FileSet
DSR575ALX
released
Annotation file set
: Chromatin accessibility QTLs from bulk coronary artery of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D