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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
candidate regulatory elements
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
DNase-seq
1
ChIP-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Biosample term
73
brain
22
caudate nucleus
18
substantia nigra
16
cerebellum
16
frontal cortex
16
layer of hippocampus
15
putamen
14
temporal lobe
12
Ammon's horn
10
SK-N-DZ
10
SK-N-SH
10
angular gyrus
10
pituitary stalk
9
cingulate gyrus
8
SK-N-MC
8
globus pallidus
8
midbrain
7
BE(2)-C
7
amygdala
7
hypothalamus
7
nucleus accumbens
6
Brodmann (1909) area 46
6
Daoy
6
anterior cingulate cortex
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cerebellum (Hemisphere)
6
medulla oblongata
6
middle frontal gyrus
6
pons
5
A172
5
M059J
5
cerebellar cortex
4
H54
4
U-87 MG
4
brain pericyte
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
inferior parietal cortex
4
medulloblastoma
3
dorsolateral prefrontal cortex
3
prefrontal cortex
2
hippocampal neuron
2
middle frontal area 46
2
pituitary gland
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cerebellar hemisphere
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
4
brain
4
connective tissue
Life stage
1
unknown
Date released
1
February, 2021
1
January, 2020
1
June, 2020
1
May, 2020
Software used
2
macs
1
deltasvm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
adrenal gland
vasculature
Showing 4 of 4 results
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Download
FileSet
DSR838IVA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR229BKS
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HBVP from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR646QPA
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain pericyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR585ZLG
released
Annotation file set
: Accessible chromatin annotation of brain pericyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP