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Schema
Citing CMDGA
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Annotation type
146
candidate regulatory elements
80
target gene predictions
74
chromatin state
27
accessible chromatin
11
gene expression
7
binding sites
7
eQTL
7
histone modifications
7
variant allelic effects
6
Fine-mapped variants
2
caQTL
1
differential activity
Annotation Category
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
2
snATAC-seq
1
RNA-seq
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
1
skeletal muscle
1
type I muscle cell
1
type II muscle cell
Disease term
1
coronary artery disease
Organ
94
epithelium
56
kidney
33
pancreas
21
vasculature
16
connective tissue
15
blood vessel
5
liver
4
artery
3
musculature of body
2
adipose tissue
2
heart
2
lymphatic vessel
Life stage
1
adult
Date released
2
October, 2022
1
February, 2024
Software used
2
eigenmt
2
rasqual
1
deseq2
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
RFA
2
AMP2
1
AMP
organ_slims!
adrenal gland
Showing 3 of 3 results
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FileSet
DSR712UEE
released
Annotation file set
: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for skeletal muscle (FDR=10%)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP