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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
candidate regulatory elements
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
2
tissue
Biosample term
67
muscle of arm
58
muscle of leg
54
muscle of back
20
psoas muscle
18
gastrocnemius medialis
17
muscle of trunk
16
skeletal muscle tissue
13
skeletal muscle satellite cell
11
esophagus muscularis mucosa
9
skeletal muscle fiber
9
stomach smooth muscle
7
LHCN-M2
7
gastroesophageal sphincter
7
type I muscle cell
7
type II muscle cell
6
skeletal muscle cell
5
A673
5
SJCRH30
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
4
rectum smooth muscle tissue
2
hindlimb muscle
2
muscle of leg
2
cardiac muscle myoblast
2
forelimb muscle
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
7
musculature of body
2
limb
Life stage
1
embryonic
1
fetal
1
unknown
Date released
4
February, 2021
1
January, 2020
1
May, 2021
1
October, 2022
Software used
3
macs
2
encode-ccres
1
abc
1
chromhmm
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
organ_slims!
adrenal gland
Showing 7 of 7 results
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Download
FileSet
DSR198EWK
released
Annotation file set
: Binding sites annotation for myotube (HSMMtube) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR706TCC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE myotube
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR300GIQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE forelimb muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR745RPS
released
Annotation file set
: Histone modifications annotation for Muscle Myotube from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR122YGR
released
Annotation file set
: Binding sites annotation for Muscle Myotube from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR594LRQ
released
Annotation file set
: enhancer-gene predicton of myotube_originated_from_skeletal_muscle_myoblast-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR902TVO
released
Annotation file set
: Accessible chromatin annotation of skeletal muscle forelimb from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP