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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
histone modifications
3
binding sites
3
target gene predictions
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
4
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
89
monocyte
55
HeLa-S3
40
H1-hESC
35
CD8-positive, alpha-beta T cell
22
stomach
21
heart
21
neural progenitor cell
20
A549
19
CD14-positive monocyte
19
HFFc6
19
brain
17
adrenal gland
17
lung
17
placenta
17
small intestine
16
kidney
16
muscle of arm
15
large intestine
15
thymus
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
left lung
13
muscle of back
12
B cell
12
liver
11
breast cancer cell
11
hematopoietic multipotent progenitor cell
11
right lung
10
pericyte cell
10
pituitary stalk
10
right kidney
9
CD4-positive, alpha-beta memory T cell
9
gastric cancer cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
9
spinal cord
8
H9
8
HepG2
8
MCF-7
8
Rhabdomyosarcoma
8
adipose tissue
8
endothelial cell
8
heart left ventricle
8
hepatocyte
8
keratinocyte
8
lymphocyte
8
neuroblastoma cell
8
psoas muscle
7
B-lymphoblastoid cell line
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
natural killer cell
7
sigmoid colon
7
smooth muscle cell
7
spleen
7
trophoblast cell
6
Chondroid Chordoma
6
dendritic cell
6
fibroblast
6
fibroblast of cardiac tissue
6
hESC cell
6
liposarcoma
6
mononuclear cell
6
neuroblastoma cell line
6
olfactory receptor cell
6
ovary
6
pancreas
6
squamous cell lung carcinoma
5
CyT49
5
T cell
5
T-cell acute lymphoblastic leukemia
5
astrocyte
5
body of pancreas
5
foreskin fibroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
macrophage
5
mammary gland epithelial cell
5
melanoma cell
5
mesenchymal stem cell
5
muscle of trunk
5
osteosarcoma
5
pancreatic ductal cell
5
regulatory T cell
4
HUES8
4
Jurkat
4
aorta
4
bronchial epithelial cell
4
cardiac muscle cell
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
epithelial cell of prostate
4
fibroblast of dermis
4
fibroblast of lung
4
iPSC derived cell line
4
layer of hippocampus
4
mammary epithelial cell
4
mesendoderm
4
neuronal stem cell
4
osteoblast
4
pancreatic acinar cell
4
pancreatic delta cell
4
prostate gland
4
retina
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
skeletal muscle tissue
4
skin fibroblast
4
testis
4
thyroid gland
4
transverse colon
3
22Rv1
3
CD4-positive helper T cell
3
CD4-positive, alpha-beta T cell
3
Ewing sarcoma
3
GM18507
3
H7-hESC
3
HCT116
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
PC-9
3
Peyer's patch
3
SK-N-DZ
3
SK-N-SH
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
U937
3
acute myeloid leukemia
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
cerebellum
3
chorion membrane
3
colonic mucosa
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endodermal cell
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
esophagus
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
luminal epithelial cell of mammary gland
3
lymphoblast
3
lymphoblastoid cell line
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal adenocarcinoma
3
substantia nigra
3
upper lobe of left lung
2
A673
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
COLO205
2
Caco-2 cell
2
EndoC_BH1
2
GM12864
2
GM12865
2
GM23248
2
HCT-116 cell
2
HEK293
2
HK-2 cell
2
HS-SY-2 cell
2
HuH-7
2
LHCN-M2
2
LNCAP
2
LNCaP clone FGC
2
MCF 10A cell
2
MDA-MB-231 cell
2
MG63
2
Mantle cell lymphoma
2
NCCIT cell
Disease term
1
hepatocellular carcinoma
Organ
8
liver
Life stage
1
child
Date released
5
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
5
macs
1
abc
1
chicago
1
r
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
blood
Showing 8 of 8 results
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Download
FileSet
DSR306YJJ
released
Annotation file set
: Target gene predictions for BSS00558 HepG2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922TKW
released
Annotation file set
: Histone modifications of integrative analysis of liver-specific noncoding regulatory variants associated with the risk of coronary artery disease. GSM4761233 and GSM4761234: HEPG2.IL1B.23h.rep1; Homo sapiens; ChIP-Seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR830EKU
released
Annotation file set
: Histone modifications of integrative analysis of liver-specific noncoding regulatory variants associated with the risk of coronary artery disease. GSM4761231 and GSM4761232: HEPG2.IL1B.8h; Homo sapiens; ChIP-Seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR518VGU
released
Annotation file set
: Histone modifications of integrative analysis of liver-specific noncoding regulatory variants associated with the risk of coronary artery disease. GSM4761229 and GSM4761230: HEPG2.IL1B.2h; Homo sapiens; ChIP-Seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR665MVN
released
Annotation file set
: Histone modifications of integrative analysis of liver-specific noncoding regulatory variants associated with the risk of coronary artery disease. GSM4761227 and GSM4761228: HEPG2.IL1B.0h; Homo sapiens; ChIP-Seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR754UCJ
released
Annotation file set
: Histone modifications annotation for Liver Hep_G2 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR651DDS
released
Annotation file set
: enhancer-gene predicton of HepG2-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR499URQ
released
Annotation file set
: A target gene prediction annotation in HepG2 of DSR452PKJ pCHi-C E-MTAB-7144
Lab:
AMP-T2D consortium
Project:
AMP