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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
pCHi-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
in vitro differentiated cells
1
stem cell
Biosample term
128
monocyte
90
heart
84
stomach
73
brain
68
lung
67
muscle of arm
66
kidney
63
HeLa-S3
62
small intestine
61
A549
60
adrenal gland
59
placenta
57
muscle of leg
55
large intestine
54
muscle of back
53
common myeloid progenitor, CD34-positive
52
H1-hESC
52
left lung
47
thymus
45
liver
45
right lung
43
CD8-positive, alpha-beta T cell
42
right kidney
41
islet of Langerhans
40
renal cortex interstitium
40
renal pelvis
40
retina
36
left kidney
35
B cell
34
heart left ventricle
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
32
spleen
30
adipose tissue
26
regulatory T cell
25
MCF-7
25
tibial nerve
23
T-helper 1 cell
23
body of pancreas
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
sigmoid colon
21
EndoC_BH1
21
caudate nucleus
21
pancreas
20
T-helper 17 cell
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
pigmented layer of retina
19
HFFc6
19
coronary artery
19
foreskin keratinocyte
19
heart right ventricle
19
hepatocyte
19
ovary
19
psoas muscle
19
right atrium auricular region
18
foreskin fibroblast
18
subcutaneous adipose tissue
18
tibial artery
17
T-helper 2 cell
17
endothelial cell of umbilical vein
17
gastrocnemius medialis
17
omental fat pad
17
substantia nigra
17
testis
17
thyroid gland
17
transverse colon
17
trophoblast cell
16
CD14-positive monocyte
16
chorionic villus
16
muscle of trunk
16
osteoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
H9
15
HepG2
15
ascending aorta
15
cerebellum
15
frontal cortex
15
layer of hippocampus
15
natural killer cell
15
neutrophil
14
endocrine pancreas
14
prostate gland
14
putamen
14
skeletal muscle myoblast
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
T cell
13
aorta
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
keratinocyte
13
neurosphere
12
Ammon's horn
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
12
temporal lobe
11
fibroblast of dermis
11
left renal pelvis
11
macrophage
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
breast epithelium
10
choroid plexus epithelial cell
10
epithelial cell of prostate
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
kidney tubule cell
10
lymphocyte
10
mammary epithelial cell
10
mammary gland epithelial cell
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
HEK293
9
SK-N-DZ
9
esophagus
9
hepatic stellate cell
9
liposarcoma
9
parathyroid adenoma
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12864
8
GM12865
8
IMR-90
8
dermis blood vessel endothelial cell
8
endothelial cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
Caco-2 cell
7
GM23248
7
HT-29
7
LNCaP clone FGC
7
SK-N-MC
7
SK-N-SH
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiac muscle cell
7
chorion membrane
7
cingulate gyrus
7
colonic mucosa
7
dermis lymphatic vessel endothelial cell
7
duodenal mucosa
7
endometrium adenocarcinoma
7
eye
7
fibroblast of pulmonary artery
7
kidney glomerular epithelial cell
7
mature neutrophil
7
renal cortical epithelial cell
7
right lobe of liver
7
skeletal muscle satellite cell
7
skin fibroblast
6
Brodmann (1909) area 46
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM18507
6
HCT116
6
HUES6
6
HUES8
6
HuH-7
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
SJSA1
6
SW480
6
WI38
6
anterior cingulate cortex
6
astrocyte
6
diffuse intrinsic pontine glioma
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
hypothalamus
Date released
1
March, 2020
Software used
1
nospecificsoft_customcode
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
organ_slims!
blood
biosample_type!
in vitro differentiated cells
Showing 1 of 1 results
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Download
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP