Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
22
foreskin keratinocyte
21
keratinocyte
19
foreskin fibroblast
12
fibroblast of dermis
12
skin fibroblast
10
dermis blood vessel endothelial cell
10
lower leg skin
dermis lymphatic vessel endothelial cell
7
GM23248
6
iPS DF 4.7 Cell Line
6
skin of body
5
RPMI7951
5
SK-MEL-5
5
iPS DF 19.11
4
dermis microvascular lymphatic vessel endothelial cell
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
3
COLO829
3
epidermal melanocyte
3
suprapubic skin
2
basal cell of epidermis
2
granular cell of epidermis
2
skin of forearm
2
skin of prepuce of penis
1
BJ
1
HGPS cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
iPS DF 4.7
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
Disease term
3
melanoma
Organ
5
skin of body
Life stage
4
adult
Date released
3
September, 2022
2
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
blood
biosample_term_name!
dermis lymphatic vessel endothelial cell
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR378UFE
released
Annotation file set
: Candidate regulatory elements for BSS01551 SK-MEL-5 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR453EBO
released
Annotation file set
: Target gene predictions for BSS01551 SK-MEL-5 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR558NIZ
released
Annotation file set
: Chromatin states for BSS01551 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR429NUM
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-MEL-5
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR136QJO
released
Annotation file set
: Histone modifications annotation for Epidermis SK-MEL-5 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP