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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
cell line
2
in vitro differentiated cells
Biosample term
21
foreskin keratinocyte
18
keratinocyte
17
foreskin fibroblast
12
fibroblast of dermis
11
skin fibroblast
10
dermis blood vessel endothelial cell
10
lower leg skin
7
dermis lymphatic vessel endothelial cell
6
GM23248
6
skin of body
5
RPMI7951
5
iPS DF 19.11
5
iPS DF 4.7 Cell Line
4
SK-MEL-5
4
dermis microvascular lymphatic vessel endothelial cell
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
3
COLO829
3
epidermal melanocyte
3
suprapubic skin
2
basal cell of epidermis
2
granular cell of epidermis
1
BJ
1
HGPS cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
iPS DF 4.7
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
skin of forearm
1
skin of prepuce of penis
Organ
5
skin of body
Life stage
3
newborn
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
macs
2
r
1
chromhmm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
blood
annotation_type!
histone modifications
Showing 5 of 5 results
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Download
FileSet
DSR771DBM
released
Annotation file set
: Candidate regulatory elements for BSS00733 iPS DF 4.7 Cell Line from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR480HBB
released
Annotation file set
: Target gene predictions for BSS00733 iPS DF 4.7 Cell Line from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR250AAT
released
Annotation file set
: Chromatin states for BSS00733 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR475VMZ
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell iPS_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR856JYQ
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell iPS cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP