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Citing CMDGA
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Annotation type
3
eQTL
1
candidate regulatory elements
1
target gene predictions
Annotation Category
3
Genetic variant effects
1
Target gene links
1
cis-regulatory elements
Annotation type Category
3
RNA-seq
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
bed bed9
File set status
5
released
Genome assembly (visualization)
3
GRCh38
2
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
19
keratinocyte
18
foreskin keratinocyte
17
foreskin fibroblast
10
skin fibroblast
9
fibroblast of dermis
8
dermis blood vessel endothelial cell
8
lower leg skin
6
GM23248
6
dermis lymphatic vessel endothelial cell
5
iPS DF 4.7 Cell Line
5
skin of body
4
RPMI7951
4
SK-MEL-5
4
dermis microvascular lymphatic vessel endothelial cell
4
iPS DF 19.11
3
iPS DF 19.7
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
suprapubic skin
2
COLO829
2
basal cell of epidermis
2
epidermal melanocyte
2
granular cell of epidermis
2
skin of forearm
2
skin of prepuce of penis
1
BJ
1
HGPS cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
iPS DF 4.7
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
Organ
5
skin of body
Life stage
2
embryonic
Date released
3
January, 2022
2
September, 2022
Software used
3
qTLtools
2
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
blood
files.file_type!
bed bed9
Showing 5 of 5 results
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Download
FileSet
DSR769MUZ
released
Annotation file set
: Candidate regulatory elements for BSS01587 skin of body from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR028IQA
released
Annotation file set
: Target gene predictions for BSS01587 skin of body from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR079ISQ
released
Annotation file set
: skin eQTL of studay TwinsUK from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR474RUC
released
Annotation file set
: skin sun exposed eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085ZSH
released
Annotation file set
: skin not sun exposed eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP