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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
127
monocyte
54
common myeloid progenitor, CD34-positive
47
CD8-positive, alpha-beta T cell
39
endothelial cell
37
B cell
32
CD4-positive, alpha-beta memory T cell
32
hepatocyte
31
CD14-positive monocyte
29
fibroblast
27
macrophage
26
regulatory T cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
epithelial cell of proximal tubule
22
pericyte cell
21
T-helper 1 cell
20
glomerular endothelial cell
20
mononuclear cell
20
natural killer cell
20
smooth muscle cell
19
T-helper 17 cell
19
foreskin keratinocyte
19
pancreatic ductal cell
18
endothelial cell of umbilical vein
18
pancreatic beta cell
18
trophoblast cell
17
astrocyte
17
keratinocyte
17
osteoblast
17
pancreatic alpha cell
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
foreskin fibroblast
16
pancreatic acinar cell
16
pancreatic delta cell
15
T-helper 2 cell
14
neutrophil
14
skeletal muscle myoblast
13
CD4-positive, alpha-beta T cell
13
mammary epithelial cell
13
mammary gland epithelial cell
13
naive thymus-derived CD4-positive, alpha-beta T cell
13
neurosphere
13
skeletal muscle satellite cell
12
bronchial epithelial cell
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
11
glomerular visceral epithelial cell
10
dermis blood vessel endothelial cell
10
erythroblast
10
kidney tubule cell
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
mature neutrophil
9
naive T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glutamatergic neuron
8
hepatic stellate cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
7
CD1c-positive myeloid dendritic cell
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
memory B cell
7
mesangial cell
7
mesenchymal stem cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
T-cell
6
cardiac muscle cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
kidney epithelial cell
6
mast cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
alternatively activated macrophage
5
basal cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
myofibroblast cell
5
non-pigmented ciliary epithelial cell
5
pancreatic endothelial cell
5
plasma cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
inflammatory macrophage
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
mesothelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
type I pneumocyte
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
Organ
5
vasculature
Life stage
4
unknown
Date released
3
September, 2022
1
February, 2021
1
January, 2020
May, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
brain
month_released!
May, 2020
Showing 5 of 5 results
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Download
FileSet
DSR712BUP
released
Annotation file set
: Candidate regulatory elements for BSS01606 smooth muscle cell of the brain vasculature from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR893YTQ
released
Annotation file set
: Target gene predictions for BSS01606 smooth muscle cell of the brain vasculature from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR431GJG
released
Annotation file set
: Chromatin states for BSS01606 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR828HMS
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE smooth muscle cell of the brain vasculature
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249BQC
released
Annotation file set
: Accessible chromatin annotation of brain vascular smooth muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP