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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
58
heart
57
stomach
54
A549
48
lung
48
muscle of arm
45
small intestine
42
adrenal gland
42
kidney
42
placenta
39
common myeloid progenitor, CD34-positive
39
left lung
39
muscle of back
39
muscle of leg
38
large intestine
33
right lung
33
thymus
30
hematopoietic multipotent progenitor cell
30
right kidney
27
CD4-positive, alpha-beta memory T cell
27
left kidney
27
renal cortex interstitium
27
renal pelvis
24
B cell
22
liver
21
CD8-positive, alpha-beta memory T cell
21
spinal cord
19
spleen
18
K562
18
adipose tissue
18
mononuclear cell
15
MCF-7
15
heart left ventricle
15
sigmoid colon
15
trophoblast cell
12
CD14-positive monocyte
12
T cell
12
body of pancreas
12
chorionic villus
12
endocrine pancreas
12
foreskin keratinocyte
12
gastrocnemius medialis
12
muscle of trunk
12
neural progenitor cell
12
ovary
12
psoas muscle
12
thyroid gland
12
transverse colon
10
tibial nerve
9
HeLa-S3
9
Peyer's patch
9
T-helper 1 cell
9
T-helper 17 cell
9
T-helper 2 cell
9
chorion membrane
9
endometrium adenocarcinoma
9
fibroblast of cardiac tissue
9
fibroblast of dermis
9
fibroblast of lung
9
heart right ventricle
9
immortal human breast epithelial cell line cell
9
mammary gland epithelial cell
9
naive T cell
9
natural killer cell
9
neurosphere
9
regulatory T cell
9
retina
9
skeletal muscle tissue
9
testis
9
upper lobe of left lung
7
HepG2
7
coronary artery
7
right atrium auricular region
7
thoracic aorta
7
tibial artery
6
22Rv1
6
LNCaP clone FGC
6
NAMALWA cell
6
T47D
6
adipocyte
6
aorta
6
ascending aorta
6
breast epithelium
6
bronchial epithelial cell
6
colonic mucosa
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
endothelial cell of umbilical vein
6
epithelial cell of prostate
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
eye
6
fibroblast of breast
6
foreskin fibroblast
6
hepatocyte
6
keratinocyte
6
kidney tubule cell
6
left renal cortex interstitium
6
left renal pelvis
6
limb
6
lower leg skin
6
mesenchymal stem cell
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
neutrophil
6
omental fat pad
6
pancreas
6
parathyroid adenoma
6
prostate gland
6
right renal cortex interstitium
6
right renal pelvis
6
skeletal muscle myoblast
6
skin fibroblast
6
stomach smooth muscle
6
tongue
6
trophoblast
6
urinary bladder
6
vagina
3
8988T
3
A673
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
BJ cell
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
COLO829
3
CWRU1
3
Caco-2 cell
3
Caki2
3
DND-41
3
DOHH2
3
EH
3
EL
3
ELF-1
3
ELR
3
ES-I3
3
G401
3
GM03348
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM12891
3
GM12892
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H1-hESC
3
H4
3
H7-hESC
3
H9
3
HAP-1
3
HCT116
3
HEK293
3
HEK293T
3
HK-2 cell
3
HL-60
3
HPDE6-E6E7
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HTR-8/Svneo
3
HUES48
3
HUES6
3
HUES64
3
HuH-7
3
HuH-7.5
3
IMR-90
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
L1-S8R
3
LHCN-M2
3
LoVo cell
Organ
2
pancreas
Life stage
2
adult
Date released
9
February, 2021
8
August, 2021
6
March, 2023
3
January, 2022
3
March, 2020
3
May, 2020
3
May, 2021
2
August, 2017
1
April, 2019
1
February, 2024
1
January, 2018
1
January, 2020
1
June, 2020
1
November, 2019
1
November, 2021
1
September, 2022
Software used
2
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
organ_slims!
brain
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR935CED
released
Annotation file set
: Islet of Langerhans accessible chromatin annotation of overlapping ATAC-seq sites from 43 non-diabetic and T2D samples with most significant peak selected.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR507522
released
Annotation file set
: Merged ATAC-seq sites in islets for 23 samples including 4 from Bing Ren at UCSD, 2 from Stephen Parker at UMich, and 17 from Mark McCarthy at Oxford (HP1507 and HP1507UW)
Lab:
AMP-T2D consortium
Project:
AMP