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Citing CMDGA
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Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
27
large intestine
10
sigmoid colon
8
transverse colon
4
colonic mucosa
4
mucosa of rectum
4
muscle layer of colon
2
HCT116
2
HT-29
2
SW480
1
Caco-2
1
LoVo
1
RKO
1
colon epithelial cell
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
Disease term
1
colorectal adenocarcinoma
Organ
2
intestine
2
large intestine
Life stage
2
adult
Date released
1
February, 2021
1
September, 2022
Software used
1
encode-ccres
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
organ_slims!
brain
pancreas
Showing 2 of 2 results
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Download
FileSet
DSR211KZE
released
Annotation file set
: Candidate regulatory elements for BSS01682 SW480 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR047FTW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SW480
Lab:
AMP-T2D consortium
Project:
AMP