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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
110
monocyte
66
heart
65
stomach
61
HeLa-S3
58
kidney
52
brain
51
muscle of arm
50
lung
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
45
H1-hESC
45
placenta
44
A549
43
large intestine
43
muscle of leg
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
39
neural progenitor cell
37
thymus
35
K562
35
retina
34
B cell
34
right lung
32
hematopoietic multipotent progenitor cell
32
liver
31
endothelial cell
31
renal cortex interstitium
31
renal pelvis
31
right kidney
27
CD14-positive monocyte
27
left kidney
27
spinal cord
26
spleen
24
heart left ventricle
23
CD4-positive, alpha-beta memory T cell
23
macrophage
22
hepatocyte
22
smooth muscle cell
21
MCF-7
20
breast cancer cell
20
pigmented layer of retina
19
HFFc6
19
keratinocyte
18
foreskin keratinocyte
18
pancreas
17
T cell
17
sigmoid colon
17
trophoblast cell
16
HepG2
16
cardiac muscle cell
16
islet of Langerhans
16
natural killer cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
GM12878
15
H9
15
ovary
15
psoas muscle
15
retinal pigment epithelial cell
14
astrocyte
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mononuclear cell
14
pancreatic ductal cell
14
tibial nerve
14
transverse colon
13
body of pancreas
13
thyroid gland
13
upper lobe of left lung
12
CD4-positive, alpha-beta T cell
12
EndoC_BH1
12
coronary artery
12
excitatory neuron
12
heart right ventricle
12
layer of hippocampus
12
mammary epithelial cell
12
muscle of trunk
12
neuroblastoma cell
pancreatic beta cell
12
testis
11
T-helper 1 cell
11
caudate nucleus
11
chorionic villus
11
endothelial cell of hepatic sinusoid
11
mammary gland epithelial cell
11
skeletal muscle myoblast
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
embryonic stem cell
10
endocrine pancreas
10
gastric cancer cell
10
neuronal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
prostate gland
10
right renal pelvis
10
skeletal muscle tissue
9
T-helper 2 cell
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
erythroblast
9
left renal cortex interstitium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
tibial artery
8
22Rv1
8
B-lymphoblastoid cell line
8
HEK293
8
IMR-90
8
breast epithelium
8
choroid plexus epithelial cell
8
fibroblast cell line
8
left cardiac atrium
8
pituitary stalk
8
right atrium auricular region
8
temporal lobe
8
trophoblast
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
GM12865
7
GM19240
7
HAP-1
7
HL-60
7
HT-29
7
Jurkat
7
T-helper 17 cell
7
aorta
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
kidney tubule cell
7
lower leg skin
7
mesendoderm
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
neutrophil
7
substantia nigra
7
thoracic aorta
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM12875
6
GM19238
6
GM19239
6
HUES8
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
ascending aorta
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
hESC cell
6
immortal human breast epithelial cell line cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
tongue
5
CyT49
5
Daoy
5
Ewing sarcoma
5
GM08714
5
GM10248
5
GM10266
5
GM12891
5
GM12892
5
GM18507
5
H7-hESC
5
HCT-116 cell
5
HCT116
5
HUES6
5
HuH-7
5
KARPAS-422 cell
5
LHCN-M2
5
LoVo cell
5
MG63
5
MM.1S
5
OCI-LY7
5
PC-9
5
SJSA1
5
SK-N-DZ
5
SK-N-SH
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
organ_slims!
connective tissue
biosample_term_name!
pancreatic beta cell
Showing 8 of 8 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP