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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
131
monocyte
88
heart
86
stomach
79
kidney
71
brain
68
lung
66
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
57
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
49
liver
48
thymus
45
right lung
44
B cell
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
41
endothelial cell
39
renal cortex interstitium
39
renal pelvis
39
retina
36
hepatocyte
36
left kidney
35
spinal cord
34
spleen
32
CD4-positive, alpha-beta memory T cell
32
heart left ventricle
32
macrophage
31
CD14-positive monocyte
28
regulatory T cell
26
MCF-7
25
pancreatic ductal cell
25
smooth muscle cell
24
tibial nerve
23
EndoC_BH1
23
T-helper 1 cell
23
body of pancreas
23
natural killer cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
21
T-helper 17 cell
21
keratinocyte
20
breast cancer cell
20
caudate nucleus
20
glomerular endothelial cell
20
mononuclear cell
20
ovary
20
pancreas
20
pigmented layer of retina
20
psoas muscle
18
HFFc6
18
coronary artery
18
embryonic stem cell
18
gastrocnemius medialis
18
pancreatic beta cell
18
thyroid gland
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
astrocyte
17
endothelial cell of umbilical vein
17
heart right ventricle
17
muscle of trunk
17
pancreatic acinar cell
17
pancreatic alpha cell
17
right atrium auricular region
17
testis
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
layer of hippocampus
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
substantia nigra
16
tibial artery
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
cerebellum
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
14
H9
14
ascending aorta
14
cardiac muscle cell
14
endocrine pancreas
14
prostate gland
14
retinal pigment epithelial cell
13
Peyer's patch
13
bronchial epithelial cell
13
excitatory neuron
13
frontal cortex
13
neurosphere
13
putamen
13
skeletal muscle satellite cell
13
temporal lobe
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
aorta
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
10
22Rv1
10
Ammon's horn
10
Rhabdomyosarcoma
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
left renal pelvis
9
liposarcoma
9
parathyroid adenoma
9
right renal pelvis
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
choroid plexus epithelial cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
kidney tubule cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BJ cell
7
CD4-positive helper T cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
memory B cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
BE(2)-C
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CMK
6
Chondroid Chordoma
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
organ_slims!
connective tissue
month_released!
January, 2020
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP