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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
chromatin state
7
accessible chromatin
7
gene expression
2
histone modifications
1
binding sites
1
eQTL
0
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
7
ATAC-seq
DNase-seq
Available data
7
bed bed3+
7
bigWig
File set status
7
released
Genome assembly (visualization)
7
GRCh38
7
hg19
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
22
fibroblast
21
retina
20
pigmented layer of retina
18
endothelial cell
16
monocyte
15
macrophage
13
excitatory neuron
11
smooth muscle cell
10
neural progenitor cell
10
pericyte cell
9
EndoC_BH1
9
pancreatic beta cell
8
T cell
8
astrocyte
8
pancreatic acinar cell
8
pancreatic alpha cell
8
pancreatic ductal cell
7
hepatocyte
7
islet of Langerhans
7
kidney
7
retinal pigment epithelial cell
7
skeletal muscle fiber
6
B cell
6
adipocyte
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
glutamatergic neuron
6
pancreatic delta cell
5
SGBS preadipocytes
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
skeletal muscle satellite cell
5
type II pneumocyte
4
CD8-positive, alpha-beta T cell
4
basal cell
4
cortical cell of adrenal gland
4
memory B cell
4
myofibroblast cell
4
pancreatic stellate cell
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
Schwann cell
3
adipose tissue
3
colon epithelial cell
3
coronary artery
3
endothelial cell of lymphatic vessel
3
gabaergic neuron
3
goblet cell
3
keratinocyte
3
liver
3
mesothelial cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
3
subcutaneous adipose tissue
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
MIN6
2
Muller cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
glial cell
2
heart left ventricle
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mast cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
naive regulatory T cell
2
naive t cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
osteoblast
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
right atrium auricular region
2
schwann cell
2
smooth muscle cell of the esophagus
2
thoracic aorta
2
thyroid follicular cell
2
tibial artery
2
tibial nerve
2
vascular associated smooth muscle cell
1
Adipose SGBS cell line (adipocyte)
1
CD4-positive helper T cell
1
CD4-positive, alpha-beta T cell
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Satellite Cells, Skeletal Muscle
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular visceral epithelial cell
1
granular cell of epidermis
1
granulosa cell
1
heart
1
hepatic stellate cell
1
hepatoblast
1
hippocampal neuron
1
immature natural killer cell
1
intestinal tuft cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lower motor neuron
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myoepithelial cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuroendocrine cell
1
neuron cell of Hypothalamus (neuron)
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
omental fat pad
1
pancreas
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
Disease term
2
diabetes mellitus,hypertensive disorder
1
chronic kidney disease
1
hypertensive disorder
1
hypertensive disorder, chronic kidney disease
Organ
7
kidney
Date released
7
August, 2021
Software used
7
macs
Lab
7
Katalin Susztak, Upenn
Project
7
AMP
RFA
7
AMP2
organ_slims!
embryo
annotation_type_category!
DNase-seq
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR016ZOX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR073KQB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR880LWO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetes mellitus/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR772HPX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetic kidney disease/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR307LRO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for control group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR574ZEL
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease/hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR937TUB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease group
Lab:
Katalin Susztak, Upenn
Project:
AMP